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Fig. 8 | BMC Genomics

Fig. 8

From: Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

Fig. 8

Comparisons of the cumulative distribution of the FPKM expression estimates of similar transcripts in the starting organism that are 80% full length transcripts (100% full length transcripts when S. pombe is the starting organism) and recovered by Velvet, Oases and extVelvet (or by ABySS, Trans-ABySS and extABySS), with the range of FPKM values in each assembly divided into 20 intervals of equal width and shown as a percentage under the x-axis. The least stringent values of k_c are used in each case, which is 25_3 for D. melanogaster and 25_10 for the other organisms

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BMC Genomics

ISSN: 1471-2164

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