Table 1 Comparison of the four tools on three datasets: S. aureus, human chromosome 14 and whole human genome for NA12878, whose draft genomes have 23, 3934, and 220,318 gaps respectively
From: GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads
Species | Gap Num. | Methods | Gaps fully closed |
|---|---|---|---|
S. aureus | 23 | GAPPadder | 9 |
| Â | Â | GapCloser | 2 |
| Â | Â | GapFiller | 1 |
| Â | Â | Sealer | 2 |
H. chrom 14 | 3934 | GAPPadder | 1670 |
| Â | Â | GapCloser | 1184 |
| Â | Â | GapFiller | 732 |
| Â | Â | Sealer | 559 |
NA12878 | 220,318 | GAPPadder | 130,371 |
| Â | Â | GapCloser | Out of memory |
| Â | Â | GapFiller | Not finished (After 725 hrs) |
| Â | Â | Sealer | 110,876 |