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Table 3 Evaluation of GAPPadder and GapCloser on closing gaps for bed bug draft genome

From: GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads

Category

GAPPadder

GapCloser

Fully closed

Reported

19,476

3299

 

Validated

14,925

2737

Extended

Reported

52,879

2417

 

Validated

37,802

20

  1. The draft genome is initially assembled with high coverage short reads, and then improved with long reads. GAPPadder fully closes 14,925 out of reported 19,476 gaps and extends 37,802 out of reported 52,879 gaps. As a comparison, GapCloser fully closes 2737 (3299 are reported) gaps and extends 20 (2417 are reported) gaps