Table 1 Summary of read numbers based on RNA-Seq data from the WT and its TfpNDM-hvKP strains
Map to gene | BD2411(WT) | BD2411 TfpNDM-hvKP | ||
|---|---|---|---|---|
read number | Precentage | read number | Precentage | |
Total reads | 20,942,019 | 100.00% | 17,132,279 | 100.00% |
Total base pairs | 6,282,605,700 | 100.00% | 5,139,683,700 | 100.00% |
Total mapped reads | 18,500,512 | 88.34% | 14,414,530 | 84.14% |
Perfect match | 17,488,892 | 83.51% | 13,172,594 | 76.89% |
≦5 bp mismatch | 1,011,620 | 4.83% | 1,241,936 | 7.25% |
Unique match | 16,147,639 | 77.10% | 12,222,918 | 71.34% |
Multi-position match | 352,873 | 1.68% | 191,612 | 1.12% |
Total unmapped reads | 2,441,507 | 16.66% | 2,717,749 | 15.86% |