Table 2 Gene border extensions in current Ssc11.1 genome annotations by PacBio Iso-seq data
From: Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data
Annotation | Type of gene extension | Number of genes | Median extension (nucleotides) |
|---|---|---|---|
Ensembl (release93) | 5′ extension only | 1476 | 60 |
3′ extension only | 3160 | 395 | |
Both ends extended | 1712 | 90 5’ | |
562 3’ | |||
NCBI (Release 109) | 5′ extension only | 1625 | 46 |
3′ extension only | 3560 | 550 | |
Both ends extended | 1425 | 67 5’ | |
507 3’ |