Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

Table 4 Numbers of SNPs able to discriminate between each pair of groups of species

SNPs with different minor alleles in groups of species with minor allele frequency (MAF) values of MAF 0.2 and MAF 0.8 were considered discriminative and grouped into the classes PolyComm_Discr, Poly_Discr or LowPoly_Discr. We combined the information from these classes to compute the numbers of SNPs able to discriminate between each pair of groups of species. This is shown for both the robust PolyHighResolution SNPs from the Axiom™ Pear 700 K Genotyping Array that had a unique alignment on the ‘Bartlett’ v2.0 genome, and the SNPs tiled on the Axiom Pear 70 K Genotyping Array. Multiple entries per SNP are possible

ISSN: 1471-2164