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Table 2 Statistics on the gene numbers related to ginsenoside biosynthesis in the RNA-seq samples of P. ginseng

From: Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng

  

In ginseng roots of 1–5 years old

In different ginseng tissues of 5 years old

Pathway

Enzyme

Sub-family

Cluster

Gene

Isoform

Sub-family

Cluster

Gene

Isoform

MVA

AACT

6

8

8

8

9

11

11

18

HMGS

8

8

9

16

11

12

12

15

HMGR

13

14

17

27

16

17

19

28

MVK

2

2

2

12

2

2

3

13

PMK

8

8

19

26

5

5

16

19

MVD

2

2

2

2

2

2

2

2

MEP

DXS

13

14

20

56

10

10

11

37

DXR

8

8

8

13

7

7

7

11

IspD

2

2

2

7

2

2

2

6

IspE

4

4

4

6

2

2

2

2

IspF

2

2

4

10

2

2

4

10

IspG

3

3

3

14

2

2

2

10

IspH

7

7

7

10

7

7

7

10

Skeleton synthesis

IPI

2

2

2

3

5

5

5

6

GGR

12

14

15

31

12

13

15

26

FPS

2

2

2

14

3

3

3

14

SS

1

2

2

13

1

2

2

10

Saponin synthesis

SE

8

10

10

21

9

11

11

20

DS

2

3

3

6

3

4

4

6

AS

7

7

8

13

4

4

4

12

GT

105

112

135

226

103

110

133

231

CYP450

81

93

98

188

80

89

93

181

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BMC Genomics

ISSN: 1471-2164

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