Table 1 Preprocessed MLST databases
MLST database | Genes including number of alleles per gene | Number of alleles (per gene) in the low similarity group | Strain and reference sequence we used for flanking region construction |
|---|---|---|---|
E. coli | adk (623), fumC (933), gyrB (606), Icd (823), mdh (614), purA (563), recA (512) | fumC (11), gyrB (3), mdh (8) | UMN026, NC_011751.1 |
K. pneumoniae | gapA (184), infB (141), mdh (245), pgi (221), phoE (365), rpoB (189), tonB (472) | gapA (6), mdh (3), tonB (29) | Kp52.145, FO834906.1 |
S. pseudintermedius | ack (46), cpn60 (96), fdh (26), pta (70), purA (77), sar (38), tuf (24) | – | ED99, NC_017568.1 |
M. bovis | adh1 (15), gltX (17), gpsA (14), gyrB (25), pta2 (23), tdk (15), tkt (26) | – | PG45, NC_014760.1. |
P. gingivalis | ftsQ (40), gpdxJ (37), hagB (37), mcmA (30), pepO (37) pga (27), recA (14) | – | ATCC 33277, NC_010729.1 |
Borrelia spp. | clpA (296), clpX (258), nifS (230), pepX (261), pyrG (269), recG (285), rplB (250), uvrA (261) | clpA (58), clpX (51), nifS (54), pepX (57), pyrG (51), recG (55), rplB (54), uvrA (45) | B. hermsii DAH, NC_010673.1 |
Streptomyces spp. | atpD (183), gyrB (179), recA (184), rpoB (183), trpB (200) | atpD (72), gyrB (147), recA (2), rpoB (6), trpB (69) | S. coelicolor A3(2), NC_003888.3 |