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Table 5 Number of polymorphic loci in local breeds and introduced lines

From: A new chicken 55K SNP genotyping array

Breeds

Average Call Rate (%)

Polymorphic locia

Mean MAFb

Chahua

97.56

42.3 K

0.242

Qingyuan

97.00

45.2 K

0.267

Wenchang

97.10

46.5 K

0.277

Luhua

97.21

44.4 K

0.261

Liyang

97.23

40.4 K

0.229

Dagu

97.46

43.7 K

0.253

Bai’er

97.36

40.0 K

0.222

Xianju

97.13

40.1 K

0.235

Silkie

97.03

45.0 K

0.258

Hubbard

97.88

46.1 K

0.269

Cobb

98.70

45.2 K

0.237

White Leghorn

97.99

43.5 K

0.249

  1. aMAF > 0.05,
  2. bAcross all 52.2 K loci