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Table 5 Number of polymorphic loci in local breeds and introduced lines

From: A new chicken 55K SNP genotyping array

Breeds Average Call Rate (%) Polymorphic locia Mean MAFb
Chahua 97.56 42.3 K 0.242
Qingyuan 97.00 45.2 K 0.267
Wenchang 97.10 46.5 K 0.277
Luhua 97.21 44.4 K 0.261
Liyang 97.23 40.4 K 0.229
Dagu 97.46 43.7 K 0.253
Bai’er 97.36 40.0 K 0.222
Xianju 97.13 40.1 K 0.235
Silkie 97.03 45.0 K 0.258
Hubbard 97.88 46.1 K 0.269
Cobb 98.70 45.2 K 0.237
White Leghorn 97.99 43.5 K 0.249
  1. aMAF > 0.05,
  2. bAcross all 52.2 K loci