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Table 3 Gene ontology terms overrepresented among differentially expressed genes in liver and muscle

From: A comparative analysis of the transcriptome profiles of liver and muscle tissue in pigs divergent for feed efficiency

Term Count B-H p-value  
GO terms overrepresented among DEGs with lower expression in the LRFI group vs HRFI group
 GO:0006612~protein targeting to membrane 10 2.59E-02 DMTN, GAS6, RPL18A, RPL3, RPS5, RPS11, RPS13, RPS18, RPS19, SSR2
 GO:0030198~extracellular matrix organization 12 5.45E-02 CREB3L1, FMOD, GAS6, HTRA1, ITGA3, LTBP2, MMP15, MMP2, NOTCH1 OLFML2B, PDGFA TIMP
GO terms overrepresented among DEGs with higher expression in the LRFI group vs HRFI group
 GO:0006952~defense response 32 9.10E-04 ADAR, CASP1, CUL1, CXCL10, DDX3X, DHX58, HERC5, IFI27, IFI44L, IFIT1,SGMS1, IFIT2, IFIT3, IFIT5 IFNGR1, IL1RAP, MX1, MX2, NLRP3, NR1D2,OASL, PARP9, PLGRKT, PSME4, RABGEf1, RORA, RSAD2, SP140, TRAF6, TRIM21, XAF1, ZBP1,
 GO:0009607~response to biotic stimulus 23 1.21E-03 ABCA1, ADAR, CASP1, CCDC47, CXCL10, DDX3X, DHX58, HERC5, IFI44L, IFIT1, IFIT2, IFIT3, IFIT5, IFNGR1, MX1, MX2, NLRP3, OASL, RSAD2, TRAF6, CMPK2, FMO1, SGMS1
 GO:0044764~multi-organism cellular process 24 1.42E-03 ADAR, CXCL10, DDX3X, DHX58, HERC5, IFI44L, IFIT1, IFIT3, IFIT5, IFNGR1, MX1, MX2, NLRP3, NUP153, OASL, PROX1, RSAD2, TOP1, TRIM21, ZMYND11, CFLAR, CUL1, IFIT2, USP7
 GO:0034097~response to cytokine 20 6.75E-03 ADAR, CXCL10, IFI27, IFIT1, IFIT2, IFIT3, IL1RAP, MX1, MX2, OASL, PARP9, PSME4, RABGEF1, RORA, SGMS1, TRAF6, TRIM21, XAF1, IFNGR1, RSAD2