Table 2 QTLs associated with coleoptile phenotypes under hypoxic conditions detected in the two cropping seasons
QTL | Environmenta | Chr.b | Marker interval | Physical interval (bp) | LODc | PVE(%)d | ADDe | known loci |
|---|---|---|---|---|---|---|---|---|
qCD-1 | ES | 1 | mk258-mk259 | 38,550,000-38,900,000 | 5.15 | 9.73 | 0.0148 | Hsu and Tung, 2015 |
qCV-2 | LS | 2 | mk312-mk313 | 1,650,000-1,750,000 | 2.80 | 5.19 | −0.0004 |  |
qCD-2-1 | ES | 2 | mk368-mk369 | 8,950,000-9,150,000 | 4.95 | 9.26 | −0.0141 |  |
qCD-2-2 | LS | 2 | mk375-mk376 | 9,850,000-9,950,000 | 5.54 | 8.72 | −0.0138 | qSHL2.2, Manangkil et al., 2013 |
qCSA-3 | LS | 3 | mk589-mk593 | 4,750,000-5,150,000 | 4.40 | 10.35 | 0.0315 | Â |
qCV-3 | LS | 3.44 | 6.53 | 0.0005 | Â | |||
qCL-3-1 | LS | 5.35 | 10.30 | 0.1586 | Â | |||
qCD-3-1 | LS | 3 | mk623-mk624 | 8,350,000-8,450,000 | 5.63 | 9.09 | −0.0138 | qSAT-3-B, Wang et al., 2009 |
qCD-3-2 | LS | 3 | mk646-mk647 | 10,950,000–11,050,000 | 5.84 | 9.81 | 0.0166 | Hsu and Tung, 2015 |
qCL-3-2 | LS | 3 | mk818-mk819 | 31,050,000-31,150,000 | 2.67 | 4.99 | 0.1066 | Â |
qCD-4-1 | LS | 4 | mk1005-mk1006 | 19,450,000–19,550,000 | 2.85 | 4.28 | 0.0095 | qSHL4.1, Manangkil et al., 2013 |
qCL-4-1 | ES | 4 | mk1033-mk1034 | 22,250,000-22,350,000 | 2.81 | 6.04 | −0.1308 |  |
qCL-4-2 | LS | 4 | mk1047-mk1052 | 23,700,000-24,450,000 | 3.30 | 6.44 | −0.1224 |  |
qCD-4-2 | ES | 4 | mk1063-mk1064 | 25,800,000-26,100,000 | 3.52 | 6.46 | 0.0116 | Â |
qCD-5 | LS | 5 | mk1219-mk1220 | 15,850,000–15,950,000 | 3.52 | 5.32 | 0.0106 |  |
qCL-6 | ES | 6 | mk1329-mk1330 | 550,000-650,000 | 2.69 | 6.02 | 0.1304 | Zhang et al., 2017 |
qCSA-6 | ES | 6 | mk1402-mk1406 | 9,850,000–10,300,000 | 3.67 | 8.65 | 0.0338 | Zhang et al., 2017 |
qCSA-6 | LS | 3.43 | 8.19 | 0.0268 | ||||
qCV-6-1 | LS | 6.27 | 12.83 | 0.0006 | ||||
qCV-6-2 | ES | 6 | mk1426-mk1427 | 13,450,000–13,700,000 | 6.56 | 12.65 | 0.0008 |  |
qCV-6-3 | ES | 6 | mk1489-mk1490 | 22,250,000-22,350,000 | 3.82 | 7.30 | −0.0006 |  |
qCD-7 | ES | 7 | mk1758-mk1759 | 26,550,000-26,650,000 | 2.86 | 5.16 | 0.0107 | qAG7–2, Angaji et al., 2010 |
qCD-7 | LS | 4.67 | 7.13 | 0.0124 | ||||
qCV-8 | ES | 8 | mk1886-mk1887 | 17,300,000–17,500,000 | 2.60 | 4.84 | 0.0005 |  |
qCD-9-1 | LS | 9 | mk1990-mk1991 | 4,450,000-4,600,000 | 4.70 | 7.19 | 0.0125 | Â |
qCV-9 | ES | 9 | mk2124-mk2125 | 20,850,000-20,950,000 | 4.37 | 8.28 | 0.0007 | Â |
qCD-9-2 | LS | 4.05 | 6.33 | 0.0114 | Â | |||
qCD-9-3 | ES | 9 | mk2130-mk2131 | 21,450,000-21,600,000 | 5.08 | 9.65 | 0.0144 | Â |
qCL-10 | ES | 10 | mk2299-mk2300 | 22,350,000-22,550,000 | 3.44 | 7.41 | 0.1445 | Hsu and Tung, 2015 |
qCL-12 | LS | 12 | mk2668-mk2673 | 21,250,000-21,900,000 | 4.35 | 8.29 | −0.1375 |  |
qCSA-12–1 | LS | 2.66 | 5.93 | −0.0227 |  | |||
qCSA-12–2 | ES | 12 | mk2708-mk2709 | 26,800,000-26,950,000 | 3.57 | 8.57 | −0.0339 | Hsu and Tung, 2015 |