Table 1 Summary of transcriptome assembly results for 14 species of corals
From: Development of a transcriptomic database for 14 species of scleractinian corals
Species | G. lobata | P. lutea | L. undulatum | L. purpurea | G. fascicularis | A. digitifera | T. peltata | M. peltiformis | D. rotumana | F. acuticollis | H. exesa | T. coccinea | P. decussata | P. carnosa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sequences | ||||||||||||||
 No. clean reads (×  106) | 53.5 | 52.9 | 57.3 | 54.6 | 57.2 | 56.8 | 57.1 | 58.0 | 57.4 | 57.1 | 52.1 | 80.1 | 49.6 | 71.6 |
 No. clean bases (× 106) | 8020.5 | 7931.8 | 8592.8 | 8190.4 | 8575.9 | 8525.0 | 8567.1 | 8692.7 | 8608.4 | 8570.6 | 7814.9 | 12,011.7 | 7446.6 | 10,703.7 |
 Q20 (%) | 94.43% | 95.03% | 94.69% | 95.02% | 95.09% | 94.78% | 94.96% | 95.17% | 95.22% | 95.25% | 94.86% | 97.20% | 94.55% | 97.78% |
 GC (%) | 48.59% | 46.62% | 47.16% | 48.40% | 45.46% | 47.21% | 49.68% | 44.41% | 47.00% | 44.99% | 47.06% | 44.82% | 48.36% | 48.68% |
Assembly | ||||||||||||||
 Contigs | 343,691 | 361,384 | 329,100 | 612,181 | 324,237 | 271,569 | 563,805 | 314,269 | 583,587 | 389,239 | 677,268 | 529,492 | 762,693 | 329,657 |
 GC% | 46 | 45 | 45 | 46 | 45 | 45 | 46 | 45 | 47 | 45 | 46 | 44 | 44 | 47 |
 N50 (bp) | 1252 | 1181 | 1427 | 979 | 1473 | 1610 | 1072 | 1292 | 629 | 1337 | 946 | 1053 | 1077 | 1132 |
 No. peptides | 298,424 | 277,066 | 293,531 | 468,029 | 289,072 | 281,219 | 435,029 | 259,788 | 364,047 | 306,486 | 495,155 | 316,983 | 452,102 | 274,164 |
 No. unigenes | 78,532 | 74,781 | 70,872 | 114,375 | 70,841 | 67,587 | 98,266 | 66,561 | 93,470 | 75,250 | 107,504 | 70,018 | 86,616 | 107,565 |
 Retained unigenes | 78,193 | 74,484 | 70,555 | 113,634 | 70,576 | 67,367 | 97,609 | 66,342 | 93,004 | 74,923 | 106,640 | 69,464 | 85,210 | 104,573 |
Completeness assessment | ||||||||||||||
 Complete (%) | 895 (91.51%) | 907 (92.74%) | 898 (91.82%) | 911 (93.15%) | 895 (91.51%) | 874 (89.37%) | 880 (89.98%) | 897 (91.72%) | 842 (86.09%) | 899 (91.92%) | 906 (92.64%) | 925 (94.58%) | 869 (88.85%) | 893 (91.31%) |
 Partial (%) | 40 (4.09%) | 30 (3.07%) | 33 (3.37%) | 44 (4.50%) | 30 (3.07%) | 27 (2.76%) | 57 (5.83%) | 22 (2.25%) | 88 (9.00%) | 38 (3.89%) | 47 (4.80%) | 36 (3.68%) | 54 (5.53%) | 49 (5.01%) |
 Missing (%) | 43 (4.40%) | 41 (4.19%) | 47 (4.81%) | 23 (2.35%) | 53 (5.42%) | 77 (7.87%) | 41 (4.19%) | 59 (6.03%) | 48 (4.91%) | 41 (4.19%) | 25 (2.56%) | 17 (1.74%) | 55 (5.62%) | 36 (3.68%) |
Unigene annotation | ||||||||||||||
 Total number | 61,440 | 58,120 | 56,529 | 86,253 | 54,862 | 54,249 | 73,723 | 51,685 | 71,551 | 57,922 | 79,394 | 53,035 | 63,291 | 78,309 |
 Annotated by nr database | 58,935 | 55,932 | 54,422 | 82,138 | 52,919 | 52,195 | 69,753 | 49,930 | 68,939 | 55,943 | 75,512 | 50,544 | 60,674 | 74,528 |
 Annotated by Interproscan | 39,253 | 36,023 | 35,383 | 58,646 | 33,451 | 33,469 | 50,410 | 31,360 | 42,071 | 36,407 | 55,404 | 39,467 | 39,111 | 46,109 |
 With GO | 31,308 | 28,816 | 28,188 | 47,479 | 26,694 | 26,827 | 40,852 | 25,142 | 33,059 | 29,274 | 45,268 | 32,664 | 30,913 | 35,866 |
 With KEGG & REACTOME | 7899 | 6664 | 6222 | 12,720 | 6040 | 5935 | 10,877 | 5888 | 8339 | 7217 | 13,102 | 9157 | 6608 | 7700 |
 No. coral genes | 19,610 | 22,621 | 22,673 | 20,913 | 21,254 | 19,806 | 16,253 | 20,569 | 27,993 | 22,226 | 15,287 | 21,993 | 29,689 | 31,327 |
 No. algal genes | 26,022 | 26,197 | 26,019 | 24,784 | 25,861 | 26,939 | 23,829 | 23,888 | 30,427 | 23,861 | 21,415 | 154 | 26,056 | 35,225 |