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Table 1 Summary of transcriptome assembly results for 14 species of corals

From: Development of a transcriptomic database for 14 species of scleractinian corals

Species G. lobata P. lutea L. undulatum L. purpurea G. fascicularis A. digitifera T. peltata M. peltiformis D. rotumana F. acuticollis H. exesa T. coccinea P. decussata P. carnosa
Sequences
 No. clean reads (×  106) 53.5 52.9 57.3 54.6 57.2 56.8 57.1 58.0 57.4 57.1 52.1 80.1 49.6 71.6
 No. clean bases (× 106) 8020.5 7931.8 8592.8 8190.4 8575.9 8525.0 8567.1 8692.7 8608.4 8570.6 7814.9 12,011.7 7446.6 10,703.7
 Q20 (%) 94.43% 95.03% 94.69% 95.02% 95.09% 94.78% 94.96% 95.17% 95.22% 95.25% 94.86% 97.20% 94.55% 97.78%
 GC (%) 48.59% 46.62% 47.16% 48.40% 45.46% 47.21% 49.68% 44.41% 47.00% 44.99% 47.06% 44.82% 48.36% 48.68%
Assembly
 Contigs 343,691 361,384 329,100 612,181 324,237 271,569 563,805 314,269 583,587 389,239 677,268 529,492 762,693 329,657
 GC% 46 45 45 46 45 45 46 45 47 45 46 44 44 47
 N50 (bp) 1252 1181 1427 979 1473 1610 1072 1292 629 1337 946 1053 1077 1132
 No. peptides 298,424 277,066 293,531 468,029 289,072 281,219 435,029 259,788 364,047 306,486 495,155 316,983 452,102 274,164
 No. unigenes 78,532 74,781 70,872 114,375 70,841 67,587 98,266 66,561 93,470 75,250 107,504 70,018 86,616 107,565
 Retained unigenes 78,193 74,484 70,555 113,634 70,576 67,367 97,609 66,342 93,004 74,923 106,640 69,464 85,210 104,573
Completeness assessment
 Complete (%) 895 (91.51%) 907 (92.74%) 898 (91.82%) 911 (93.15%) 895 (91.51%) 874 (89.37%) 880 (89.98%) 897 (91.72%) 842 (86.09%) 899 (91.92%) 906 (92.64%) 925 (94.58%) 869 (88.85%) 893 (91.31%)
 Partial (%) 40 (4.09%) 30 (3.07%) 33 (3.37%) 44 (4.50%) 30 (3.07%) 27 (2.76%) 57 (5.83%) 22 (2.25%) 88 (9.00%) 38 (3.89%) 47 (4.80%) 36 (3.68%) 54 (5.53%) 49 (5.01%)
 Missing (%) 43 (4.40%) 41 (4.19%) 47 (4.81%) 23 (2.35%) 53 (5.42%) 77 (7.87%) 41 (4.19%) 59 (6.03%) 48 (4.91%) 41 (4.19%) 25 (2.56%) 17 (1.74%) 55 (5.62%) 36 (3.68%)
Unigene annotation
 Total number 61,440 58,120 56,529 86,253 54,862 54,249 73,723 51,685 71,551 57,922 79,394 53,035 63,291 78,309
 Annotated by nr database 58,935 55,932 54,422 82,138 52,919 52,195 69,753 49,930 68,939 55,943 75,512 50,544 60,674 74,528
 Annotated by Interproscan 39,253 36,023 35,383 58,646 33,451 33,469 50,410 31,360 42,071 36,407 55,404 39,467 39,111 46,109
 With GO 31,308 28,816 28,188 47,479 26,694 26,827 40,852 25,142 33,059 29,274 45,268 32,664 30,913 35,866
 With KEGG & REACTOME 7899 6664 6222 12,720 6040 5935 10,877 5888 8339 7217 13,102 9157 6608 7700
 No. coral genes 19,610 22,621 22,673 20,913 21,254 19,806 16,253 20,569 27,993 22,226 15,287 21,993 29,689 31,327
 No. algal genes 26,022 26,197 26,019 24,784 25,861 26,939 23,829 23,888 30,427 23,861 21,415 154 26,056 35,225