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Table 1 Summary of assembling and functional annotation of S. crosnieri transcriptomes

From: Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps

 

Hydrothermal vent

Cold seep

Total

Sequencing data statistics

 Raw reads

222,129,956

208,810,080

430,940,036

 Clean bases (Gb)

20.17

19.62

39.79

 Clean reads

161,376,548

157,076,052

318,452,600

Assembly statistics

 

 Number of transcripts

189,543

 Mean length of transcripts

583

 N50 of transcripts

796

 Number of unigenes

108,237

 Mean length of unigenes

838

 N50 of unigenes

1125

Functional annotation

 

 NCBI non-redundant (nr) database

36,114 (33.37%)

 SwissProt

32,419 (29.95%)

 KOG

28,605 (26.43%)

 KEGG

13,588 (12.55%)

 GO

30,486 (28.17%)

 Annotated in all database

11,140 (10.29%)

 Annotated in at least one database

39,806 (36.78%)