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Table 1 Summary of assembling and functional annotation of S. crosnieri transcriptomes

From: Transcriptomic analysis reveals insights into deep-sea adaptations of the dominant species, Shinkaia crosnieri (Crustacea: Decapoda: Anomura), inhabiting both hydrothermal vents and cold seeps

  Hydrothermal vent Cold seep Total
Sequencing data statistics
 Raw reads 222,129,956 208,810,080 430,940,036
 Clean bases (Gb) 20.17 19.62 39.79
 Clean reads 161,376,548 157,076,052 318,452,600
Assembly statistics  
 Number of transcripts 189,543
 Mean length of transcripts 583
 N50 of transcripts 796
 Number of unigenes 108,237
 Mean length of unigenes 838
 N50 of unigenes 1125
Functional annotation  
 NCBI non-redundant (nr) database 36,114 (33.37%)
 SwissProt 32,419 (29.95%)
 KOG 28,605 (26.43%)
 KEGG 13,588 (12.55%)
 GO 30,486 (28.17%)
 Annotated in all database 11,140 (10.29%)
 Annotated in at least one database 39,806 (36.78%)