Table 1 Summary of the transcriptome data from PacBio RSII platform and Illumina Hiseq platform
Platform | |
|---|---|
Illumina Hiseq (n = 15) | |
 Raw reads (average) | 5,562,602.5 |
 Clean reads (average) | 53,312,258.5 |
 Clean bases (G, total) | 119.97 |
 Base error rate (average) | 0.015% |
 Q30 (average) | 93.46% |
 GC content (average) | 47.05% |
 Unigenes annotated in at least one database (NR, NT, KO, Swissprot, Pfam, GO, KOG) | 129,325 |
 Unigenes annotated in all databeses | 29,191 |
 Total unigenes | 130,553 |
 TF number | 8006 (6.19%) |
PacBio RSII (n = 15) | |
 Total CCS | 617,063 |
 Full length reads | 467,672 (75.9%) |
 FLNC reads | 434,967 (70.5%) |
 Average FLNC read length | 1720 bp |
 Consensus reads | 199,106 |
 Subreads base (G) | 13.46 |
 Subreads number | 14,267,901 |
 Average subreads length | 944 bp |
 N50 | 1572 |
 Total unigenes annotated in at least one database (NR, NT, KOG, Swissprot, Pfam, GO, KEGG) | 140,196 |
 Total unigenes | 44,938 |
 TF number | 9407 (5.08%) |