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Table 2 Contrasts in our study for assessing GO and pathways analysis

From: Transcriptomic responses to diet quality and viral infection in Apis mellifera

Contrast DEGs Interpretation Results
V (all) vs N (all) 43 Genes that change expression due to virus effect regardless of diet status in bees Table 1
NC vs NR 941 Genes that change expression due to diet effect in non-inoculated bees Additional file 1: Table S4 and 5
VC vs VR 376 Genes that change expression due to diet effect in inoculated bees Additional file 1: Table S6 and 7
VC upregulated in VC vs VR, and NC upregulated in NC vs NR 122 “Tolerance” genes that turn on by good diet regardless of virus infection status in bees Fig. 5a
VC upregulated in VC vs VR, but NC not upregulated in NC vs NR 125 “Resistance” genes that turn on by good diet only in inoculated bees Fig. 5b