Table 2 Contrasts in our study for assessing GO and pathways analysis
From: Transcriptomic responses to diet quality and viral infection in Apis mellifera
Contrast | DEGs | Interpretation | Results |
|---|---|---|---|
V (all) vs N (all) | 43 | Genes that change expression due to virus effect regardless of diet status in bees | Table 1 |
NC vs NR | 941 | Genes that change expression due to diet effect in non-inoculated bees | Additional file 1: Table S4 and 5 |
VC vs VR | 376 | Genes that change expression due to diet effect in inoculated bees | Additional file 1: Table S6 and 7 |
VC upregulated in VC vs VR, and NC upregulated in NC vs NR | 122 | “Tolerance” genes that turn on by good diet regardless of virus infection status in bees | Fig. 5a |
VC upregulated in VC vs VR, but NC not upregulated in NC vs NR | 125 | “Resistance” genes that turn on by good diet only in inoculated bees | Fig. 5b |