Skip to main content

Advertisement

Table 3 Number of specifically up/down-regulated DEUs annotated as IFN system genes, immunoglobulins or myosins from s-H vs c-H, s-F vs c-F and s-A+ vs c-A+

From: Differential expression of innate and adaptive immune genes in the survivors of three gibel carp gynogenetic clones after herpesvirus challenge

Category Gene Abbrev-iation Number of up-regulated DEUs Number of down-regulated DEUs
s-H vs c-H s-F vs c-F s-A+ vs c-A+ s-H vs c-H s-F vs c-F s-A+ vs c-A+
IFN system host pattern recognition receptors lgp2 3 1 0 0 0 1
tlr4b 1 0 0 0 0 0
tlr22 2 0 0 0 0 0
tlr7a 0 0 0 0 1 0
nlrp3 4 7 3 4 1 3
nlrp12 4 4 1 0 0 0
ifnγr2 0 3 0 0 0 0
PRR-mediated IFN signal pathway stat1 3 3 0 0 0 0
stat2 3 0 0 0 0 0
IFN regulatory factor irf3 0 0 0 0 0 1
irf7 4 0 0 0 0 1
interferon- induced proteins or IFN antiviral 7effectors mx1 4 6 4 3 3 3
mx3 2 3 0 0 0 1
viperin 4 0 0 0 0 2
ifi27 2 0 0 0 0 0
ifi44 4 6 0 0 0 1
ifi56 1 0 0 0 0 0
gig1 4 1 0 0 0 0
gig2 3 0 0 0 0 0
gvinp1 4 9 1 0 0 0
irgc 2 0 0 0 0 0
isg15 3 0 0 0 0 1
eif2ak2 1 0 0 0 0 0
gbp 0 2 0 0 0 0
traf2 0 1 0 0 0 0
t2 bp 0 1 0 0 0 0
ifitm1 0 1 0 1 0 0
Ifitm3 0 1 0 0 0 0
interferon ifnγ1 0 1 1 0 0 0
Total number 58 50 10 8 5 14
Immunoglobulin immunoglobulin heavy chain IgM 15 0 7 0 40 3
IgZ 3 0 5 0 11 3
IgD 1 0 1 0 0 0
immunoglobulin light chain IgLλ 13 0 19 4 66 4
IgLκ 10 0 0 0 1 1
immunoglobulin receptor-like pIgRL 1 1 1 0 0 0
immunoglobulin superfamily Igsf3 0 0 0 1 0 2
Total number 43 1 33 5 118 13
myosin superfamily myosin heavy chain myh7 0 0 4 0 0 0
myh9 0 0 1 0 2 1
myh10 1 3 1 0 0 0
myh11 0 0 0 0 1 0
myha 0 0 2 0 0 0
myhb 0 0 1 0 2 0
myo3b 0 0 1 0 0 0
myo5a 0 0 0 1 0 0
myo9b 0 1 0 0 1 0
myo10 0 1 0 0 1 0
myo18a 0 1 1 0 0 0
myo18b 0 0 0 1 0 0
myosin light chain myl1 0 0 0 0 1 0
myl2 0 0 2 0 2 0
myl3 0 0 3 0 1 0
myl10 0 0 1 0 1 0
mylk 2 0 0 1 0 0
Total number 3 6 17 3 12 1