Skip to main content

Advertisement

Table 1 Summary of all enhancer sets analyzed in this study

From: Genome-wide enhancer annotations differ significantly in genomic distribution, evolution, and function

Context Enhancer Set Number of Base Pairs (kb) Number of Enhancers Median Length Genome Coverage
K562 H3K27acPlusH3K4me1 22,113 6642 1903 0.0078
H3K27acMinusH3K4me3 34,072 19,698 525 0.0120
DNasePlusHistone 6620 13,402 431 0.0023
ChromHMM 96,545 100,837 600 0.0339
EncodeEnhancerlike 39,961 36,008 878 0.0140
Ho14 29,027 35,769 556 0.0102
Yip12 5389 13,303 342 0.0019
p300 7939 26,463 316 0.0028
GRO-cap 3905 23,825 160 0.0014
FANTOM 390 1084 344 0.0001
Gm12878 H3K27acPlusH3K4me1 28,355 8019 2749 0.0099
H3K27acMinusH3K4me3 20,868 11,238 701 0.0073
DNasePlusHistone 9286 19,815 386 0.0033
ChromHMM 73,929 69,314 800 0.0259
EncodeEnhancerlike 50,224 38,872 1018 0.0176
Ho14 41,543 39,550 674 0.0146
Yip12 5389 13,303 342 0.0019
p300 6480 17,532 360 0.0023
GRO-cap 3646 21,308 160 0.0013
FANTOM 1025 2826 343 0.0004
Liver H3K27acPlusH3K4me1 87,576 37,644 1831 0.0307
H3K27acMinusH3K4me3 137,874 77,014 1096 0.0484
DNasePlusHistone 51,292 170,212 152 0.0180
ChromHMM 108,375 101,260 800 0.0380
EncodeEnhancerlike 89,129 37,426 1849 0.0313
FANTOM 326 869 347 0.0001
Villar15 86,139 27,725 2545 0.0302
Heart H3K27acPlusH3K4me1 59,892 42,910 1102 0.0210
H3K27acMinusH3K4me3 157,468 141,162 684 0.0553
DNasePlusHistone 33,224 103,898 168 0.0117
ChromHMM 93,067 113,092 600 0.0327
EncodeEnhancerlike 186,866 47,235 2872 0.0656
FANTOM 611 1720 335 0.0002