Table 1 Cassava AQP family genes identified in this study
Gene name | Locus ID | Chr location | Nucleotide length (bp, from start to stop codons) | Intron no. | EST no. | Comment | |
|---|---|---|---|---|---|---|---|
CDS | Gene | ||||||
MePIP1;1 | Manes.01G059600 | Chr1:17535987–17,539,206 | 864 | 2626 | 3 | 15 | |
MePIP1;2 | Manes.02G020100 | Chr2:1624224–1,626,227 | 864 | 1654 | 3 | 16 | |
MePIP1;3 | Manes.07G126600 | Chr7:25215682–25,217,264 | 864 | 1157 | 3 | 20 | |
MePIP1;4 | Manes.10G016600 | Chr10:1312629–1,314,244 | 864 | 1166 | 3 | 23 | |
MePIP2;1 | Manes.08G006800 | Chr8:512954–514,468 | 867 | 1127 | 3 | 21 | |
MePIP2;2 | Manes.09G068800 | Chr9:9307274–9,308,662 | 867 | 1157 | 3 | 4 | |
MePIP2;3 | Manes.07G100500 | Chr7:22842955–22,845,156 | 858 | 1852 | 3 | 3 | |
MePIP2;4 | Manes.10G046200 | Chr10:4375805–4,379,849 | 861 | 3655 | 3 | 5 | |
MePIP2;5 | Manes.04G021200 | Chr4:2304659–2,306,481 | 861 | 1396 | 3 | 2 | |
MePIP2;6 | Manes.11G145300 | Chr11:25677637–25,679,377 | 861 | 1300 | 3 | 10 | |
MePIP2;7 | Manes.04G076500 | Chr4:21375880–21,377,507 | 843 | 1265 | 3 | 21 | |
MePIP2;8 | Manes.11G096600 | Chr11:15805567–15,807,131 | 843 | 1236 | 3 | 2 | |
MePIP2;9 | Manes.02G109200 | Chr2:8173111–8,174,880 | 852 | 1330 | 3 | 17 | |
MePIP2;10 | Manes.05G144100 | Chr5:20526797–20,528,273 | 846 | 1122 | 3 | 3 | |
MeTIP1;1 | Manes.08G012800 | Chr8:924654–925,957 | 759 | 855 | 1 | 47 | |
MeTIP1;2 | Manes.09G062300 | Chr9:8402765–8,403,903 | 759 | 853 | 1 | 80 | |
MeTIP1;3 | Manes.07G111500 | Chr7:23996724–23,997,990 | 759 | 957 | 2 | 0 | |
MeTIP1;4 | Manes.10G035000 | Chr10:2983924–2,985,053 | 759 | 848 | 1 | 2 | |
MeTIP1;5 | Manes.04G030400 | Chr4:3360155–3,361,296 | 759 | 962 | 2 | 0 | |
MeTIP1;6 | Manes.11G134600 | Chr11:24689956–24,691,006 | 759 | 977 | 2 | 1 | |
MeTIP2;1 | Manes.11G036500 | Chr11:3094579–3,095,833 | 747 | 954 | 2 | 17 | |
MeTIP2;2 | Manes.01G081600 | Chr1:20741570–20,742,776 | 753 | 928 | 2 | 1 | |
MeTIP2;3 | Manes.02G040800 | Chr2:3161794–3,163,035 | 753 | 969 | 2 | 7 | |
MeTIP3;1 | Manes.01G160000 | Chr1:26663550–26,664,500 | 777 | 951 | 2 | 0 | |
MeTIP3;2 | Manes.02G118300 | Chr2:8751200–8,752,174 | 777 | 975 | 2 | 0 | |
MeTIP4;1 | Manes.03G062300 | Chr3:6536427–6,538,114 | 744 | 1458 | 2 | 6 | |
MeTIP5;1 | Manes.14G036400 | Chr14:2919392–2,920,528 | 759 | 1137 | 2 | 0 | |
MeNIP1;1 | Manes.16G044000 | Chr16:6177753–6,179,082 | 840 | 1600 | 4 | 0 | Misannotated |
MeNIP1;2 | Manes.17G061100 | Chr17:19971252–19,973,361 | 858 | 1712 | 4 | 1 | |
MeNIP2;1 | Manes.01G091200 | Chr1:21577225–21,580,168 | 867 | 2458 | 4 | 2 | |
MeNIP3;1 | Manes.02G152300 | Chr2:11346718–11,348,621 | 852 | 1213 | 4 | 0 | |
MeNIP3;2 | Manes.12G133900 | Chr12:28849870–28,851,480 | 822 | 1102 | 4 | 0 | |
MeNIP3;3 | Manes.13G093600 | Chr13:19561358–19,562,924 | 825 | 1049 | 4 | 0 | |
MeNIP5;1 | Manes.01G001400 | Chr1:259425–262,398 | 897 | 2448 | 3 | 4 | |
MeNIP6;1 | Manes.04G104100 | Chr4:24004959–24,008,297 | 921 | 2638 | 4 | 0 | |
MeNIP7;1 | Manes.03G183400 | Chr3:27015982–27,017,206 | 900 | 1225 | 4 | 0 | |
MeXIP1;1 | Manes.04G078900 | Chr4:21735846–21,737,169 | 885 | 1234 | 1 | 0 | |
MeXIP2;1 | Manes.11G089300 | Chr11:12980304–12,982,216 | 915 | 1615 | 2 | 2 | |
MeXIP3;1 | Manes.11G089200 | Chr11:12950526–12,952,826 | 915 | 2301 | 2 | 0 | Misannotated |
MeXIP3;2 | Manes.11G089100 | Chr11:12935690–12,936,439 | 924 | 4465 | 2 | 0 | Misannotated |
MeSIP1;1 | Manes.09G144400 | Chr9:26227923–26,233,566 | 720 | 5135 | 2 | 5 | |
MeSIP2;1 | Manes.09G074000 | Chr9:10639757–10,640,714 | 714 | 17,010 | 2 | 3 | Misannotated |