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Fig. 8 | BMC Genomics

Fig. 8

From: Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Fig. 8

Differential expression analysis testing immune genes for response to pathogen challenge. Results from RT-qPCR for the IL6 and CCL20 genes in response to E. coli challenge: samples from challenged (filled boxed) and non-challenged (open boxes) udder samples of three cows. Variants A and B differ in antisense oligonucleotide input for RNA depletion (see Materials and Methods), while 0 comprises the non-depleted RNA. *: p < 0.05, **: p < 0.01, ***: p < 0.001, †: p < 0.10

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