Table 2 Percentage of fragments mapped to individual milk protein transcripts in relation to the total number of fragments in each sample as counted by featureCounts [50]
Udder quarter treatment | Animal No. | Sample treatmenta | LALBA | CSN1S1 | CSN3 | CSN2 | CSN1S2 | PAEP |
|---|---|---|---|---|---|---|---|---|
Non-challenged | Cow1 | 0 | 2.7 | 15.7 | 11.5 | 31.1 | 4.2 | 5.5 |
A | 3.1 | 17.9 | 0.6 | 9.6 | 0.3 | 4.5 | ||
B | 2.6 | 12.2 | 0.2 | 8.7 | 0.2 | 5.9 | ||
Cow2 | 0 | 0.8 | 18.7 | 9.6 | 14.3 | 4.9 | 3.9 | |
A | 0.5 | 18.7 | 0.8 | 3.1 | 0.1 | 2.2 | ||
B | 0.4 | 16.4 | 0.2 | 2.8 | 0.1 | 2.0 | ||
Cow3 | 0 | 1.0 | 16.7 | 9.5 | 21.6 | 4.9 | 7.4 | |
A | 1.0 | 14.3 | 0.7 | 4.2 | 0.1 | 5.2 | ||
B | 0.8 | 11.6 | 0.1 | 3.8 | 0.1 | 5.0 | ||
Challenged | Cow1 | 0 | 1.1 | 15.2 | 11.1 | 21.9 | 3.3 | 4.3 |
A | 1.0 | 12.1 | 0.6 | 5.9 | 0.1 | 3.8 | ||
B | 0.9 | 9.0 | 0.2 | 5.4 | 0.0 | 4.0 | ||
Cow2 | 0 | 0.4 | 12.3 | 7.5 | 6.3 | 2.1 | 4.2 | |
A | 0.2 | 6.2 | 0.2 | 2.2 | 0.0 | 1.8 | ||
B | 0.2 | 4.5 | 0.0 | 1.4 | 0.0 | 1.7 | ||
Cow3 | 0 | 0.0 | 0.1 | 0.5 | 0.1 | 0.0 | 0.0 | |
A | 0.0 | 0.1 | 0.0 | 0.0 | 0.0 | 0.0 | ||
B | 0.0 | 0.0 | 0.1 | 0.0 | 0.0 | 0.0 |