Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Table 5 Number of all expressed loci and the subset of unknown expressed loci based on a group-specific transcriptome annotation

Groups^a	All loci	All loci with FPKM > 1	Unknown loci	Unknown loci with FPKM > 1
0	32,434	16,168	4411	1915
A	43,331	19,396	11,023	2997
B	35,510	17,779	6343	2509

^aSamples without RNA depletion (0) and with RNA depletion according to variants A (A) and B (B). Variants A and B differ in antisense oligonucleotide input for depletion (see Materials and Methods)

ISSN: 1471-2164