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Table 5 Number of all expressed loci and the subset of unknown expressed loci based on a group-specific transcriptome annotation

From: Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Groupsa All loci All loci with FPKM > 1 Unknown loci Unknown loci with FPKM > 1
0 32,434 16,168 4411 1915
A 43,331 19,396 11,023 2997
B 35,510 17,779 6343 2509
  1. aSamples without RNA depletion (0) and with RNA depletion according to variants A (A) and B (B). Variants A and B differ in antisense oligonucleotide input for depletion (see Materials and Methods)