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Table 6 Antisense oligonucleotide sequences designed for targeting highly abundant transcripts in the mammary gland

From: Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Gene name

Accession number

Oligonucleotide name

Oligonucleotide sequence (5′-3′)

PAEP

NM_173929.3

LGB_R5

GGGCTCACCTAGATGTGGCACTGCTC

LGB_R6

GCTCAGCACTGTTCTCCATGCAGAAG

LALBA

NM_174378.2

LALBA_R6

GTCATCAGTAAGATCATCATCCAGGAAC

LALBA_R7

CAGAACAGAGTGCTTTATGGGCCAACC

CSN1S2

NM_174528.2

CSN1S2_R3

ATAACCAGGTAGAAGCAGTTAATTCCAG

CSN1S2_R4

ATGCTGGTTGTATGAAGTAAAGTGGTAG

CSN1S1

NM_181029.2

CSN1S1_R7

TCAGAATTCACTTGACTCCTCACCACAG

CSN1S1_R8

TAGGATTAGGGATGTCAGAGAATGATGG

CSN3

NM_174294.2

CSN3_R6

GTAAGAGGAGACGAGGAAGGAGCCAG

CSN3_R7

ACTGTGTTGATCTCAGGTGGGCTCTC

CSN2

XM_010806178.1

CSN2_R4

TCCAGTCGCAGTCAATTCAAAAGTGAG

CSN2_R5

CTTTCTGGGGAACAGGCAGGACTTTG