Comparative genome analysis of the Lactobacillus brevis species

Feyereisen, Marine; Mahony, Jennifer; Kelleher, Philip; Roberts, Richard John; O’Sullivan, Tadhg; Geertman, Jan-Maarten A.; van Sinderen, Douwe

doi:10.1186/s12864-019-5783-1

BMC Genomics

Table 5 List of genes identified in the chromosome sequence of at least four L. brevis beer spoiler strains. 26 genes coding for hypothetical proteins were also identified

From: Comparative genome analysis of the Lactobacillus brevis species

COG category and protein function	L. brevis beer-spoiler strains
COG category and protein function	TMW1.2108	TMW1.2111	TMW1.2112	TMW1.2113	UCCLB95	UCCLBBS124	UCCLBBS449
	Energy production and conversion
Flavodoxin	+	+	+	+	+	+	+
NADH-Flavin reductase	+	+	–	–	+	+	+
Oxidoreductase	+	+	+	+	+	+	+
NADPH:quinone reductase	+	+	–	–	+	+	+
FMN-dependent NADH-azoreductase	+	+	–	–	+	+	+
Nitrobenzoate reductase	+	+	–	–	+	+	+
	Amino acid transport and metabolism
Shikimate dehydrogenase	+	+	+	+	+	+	+
Acetyltransferase GNAT family	+	+	–	–	+	+	+
Serine O-acetyltransferase EC	+	+	–	–	+	+	+
	Carbohydrate transport and metabolism
MFS transporter	+	+	–	–	+	+	+
Alpha-glucosidase	+	+	+	+	+	+	+
lycoside hydrolase	+	+	–	–	–	+	+
Hydrolase	+	+	+	+	+	+	+
Transketolase	+	+	+	+	–	–	–
MFS transporter	+	+	+	–	+	+	–
PTS system2C IIA component 1	+	+	–	–	+	+	+
Putative integral membrane protein 1	+	+	–	–	+	+	+
PTS2C EIIB 1	+	+	–	–	+	+	+
PTS mannitol transporter subunit IIA	+	+	–	–	+	+	+
Putative oligogalacturonide transporter	+	+	+	+	+	–	+
	Coenzyme transport and metabolism
6-pyruvoyl tetrahydropterin synthase	+	+	+	+	–	+	–
	Lipid transport and metabolism
NADH peroxidase	+	+	+	+	+	+	+
Peroxidase	+	+	–	–	+	+	+
Citrate lyase	+	+	–	–	+	+	+
	Transcription
Transcriptional regulator2C TetR family	+	+	–	–	+	+	+
Transcriptional regulator	+	+	+	+	+	+	+
Transcriptional regulator TetR family	+	+	–	–	+	+	+
Transcriptional regulator	+	+	+	+	+	+	+
Internalin-J	–	+	+	+	+	+	+
RNA polymerase sigma-24 subunit ECF subfamily	+	+	+	+	+	+	+
ECF-type sigma factor negative effector	+	+	+	+	+	+	+
Transcriptional regulator	+	+	+	+	+	+	+
Transcriptional regulator MarR family	+	+	–	–	+	+	+
Transcriptional regulator	+	+	–	–	+	+	+
Transcriptional regulator MarR family	+	+	–	–	+	+	+
Transcriptional regulator TetR	+	+	–	–	–	+	+
Transcriptional regulator ArsR family	+	+	–	–	+	+	+
	Cell wall/membrane/envelope biogenesis
Membrane protein	+	+	–	+	–	+	–
Cell surface protein	+	+	+	+	–	–	–
Cell surface protein	+	+	–	–	–	+	+
Endo polygalacturonase	+	+	+	+	–	–	+
Glutamyl endopeptidase precursor	+	+	+	+	+	+	+
NLP-P60 protein	+	+	+	+	+	+	+
Short-chain dehydrogenase-oxidoreductase	+	+	–	–	+	+	+
	Inorganic ion transport and metabolism
Permease	+	+	+	+	+	+	+
Permease	+	+	+	+	+	–	+
Na + −H+ antiporter	+	+	–	–	+	+	–
	General function prediction only
NADPH-quinone reductase	+	+	+	+	+	+	+
Short-chain dehydrogenase-oxidoreductase	+	+	+	+	+	+	+
Short-chain dehydrogenase	+	+	+	+	+	+	–
Cell surface adherence protein	–	–	+	+	+	+	+
Mucus-binding protein LPXTG-motif cell wall anchor	+	+	+	+	+	–	+
	Function unknown
Cell surface hydrolase	+	+	+	+	+	+	+
Membrane protein	+	+	+	+	–	+	+
Cell surface protein	+	+	–	–	+	+	+
	Defence mechanisms
ABC transporter ATP-binding protein	+	+	+	+	+	+	+
ABC transporter permease	+	+	+	+	+	+	+
Prophage protein	+	+	+	+	–	–	+

+: gene present, −: gene absent

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ISSN: 1471-2164

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