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Table 3 Significant SNPs assigned to candidate genes for oligosaccharide synthesis in Danish Holstein

From: A genome-wide association study reveals specific transferases as candidate loci for bovine milk oligosaccharides synthesis

Gene Gene name Chr.b # SNPc Highest -log10(P-value) PVE%d Traita  
B3GNT5 UDP-GlcNAc:betaGal beta-1.3-N-acetylglucosaminyltransferase 5 1 4 20.779 24.02 3_1_0_0_0 LNT
B3GNT5 UDP-GlcNAc:betaGal beta-1.3-N-acetylglucosaminyltransferase 5 1 3 19.771 22.94 4_2_0_0_0 LNH
LOC520336 N-acetyllactosaminide beta-1.6-N-acetylglucosaminyl-transferase. Isoform C 23 2 6.318 7.34 4_2_0_0_0 LNH
ALG3 ALG3. alpha-1.3- mannosyltransferase 1 1 6.307 7.32 4_2_0_0_0 LNH
ALG3 ALG3. alpha-1.3- mannosyltransferase 1 1 5.054 5.76 3_1_0_0_0 LNT
B3GALNT2 beta-1.3-N-acetylgalactosaminyltransferase 2 28 2 5.539 6.37 5_4_0_0_0
GLT6D1 glycosyltransferase 6 domain containing 1 11 2 5.124 5.85 4_1_0_0_0
  1. aOligosaccharides are represented by their monosaccharide compositions, denoted as Hex_HexNAc_Fuc_NeuAc_NeuGc
  2. bChr chromosome
  3. c#SNP number of significant SNPs assigned to candidate gene
  4. dPVE% Percentage of phenotypic variation explained