Identification of key genes and molecular mechanisms associated with low egg production of broiler breeder hens in ad libitum

Table 1 RNA-seq reads and mapping rate of different tissues from hens under ad libitum and restricted feeding

Sample ID	Raw reads	Clean reads	Clean bases (G)	Q20 (%)	Multiple mapped	Uniquely mapped	Mapping rate (%)
L1724_R	64,392,818	61,090,010	7.64	95.03	590,134	51,109,302	84.63
L6709_R	59,658,748	56,872,116	7.11	95.28	721,126	48,296,701	86.19
L6710_R	61,714,914	58,355,650	7.29	95.08	609,771	48,887,646	84.82
F1724_R	54,087,908	50,706,756	6.34	94.55	573,191	39,236,404	78.51
F6709_R	59,471,818	55,779,296	6.97	94.61	679,048	43,773,708	79.69
F6710_R	61,929,858	57,824,398	7.23	94.63	657,150	44,024,598	77.27
O1724_R	62,493,328	58,686,194	7.34	94.47	727,917	45,868,843	79.24
O6709_R	61,744,970	58,780,766	7.35	94.99	706,095	48,277,775	83.33
O6710_R	62,257,620	58,644,500	7.33	94.78	699,080	46,991,269	81.32
L1721_ad	58,134,934	55,036,848	6.88	95.02	657,817	45,941,840	84.67
L1725_ad	52,149,722	49,683,928	6.21	95.07	530,491	42,807,229	87.23
L1723_ad	52,895,016	50,549,914	6.32	95.31	579,622	43,351,355	86.91
F1721_ad	74,115,894	69,624,988	8.7	94.87	842,600	54,239,290	79.11
F1725_ad	65,772,032	61,471,800	7.68	94.76	603,536	45,625,211	75.2
F1723_ad	63,539,320	58,562,688	7.32	94.22	748,009	43,141,371	74.94
O1721_ad	62,882,770	59,623,398	7.45	94.96	723,632	48,555,048	82.65
O1725_ad	58,060,322	54,925,226	6.87	94.87	645,717	43,622,886	80.6
O1723_ad	66,648,496	63,031,132	7.88	94.86	781,846	49,771,569	80.2

Note, Letter L, F and O represent the sample from liver, adipose and ovary, respectively. Letter R and ad represent restricted feeding group and ad libitum feeding group. The numbers between letters represent the sample number.

ISSN: 1471-2164