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Table 1 RNA-seq reads and mapping rate of different tissues from hens under ad libitum and restricted feeding

From: Identification of key genes and molecular mechanisms associated with low egg production of broiler breeder hens in ad libitum

Sample ID Raw reads Clean reads Clean bases (G) Q20 (%) Multiple mapped Uniquely mapped Mapping rate (%)
L1724_R 64,392,818 61,090,010 7.64 95.03 590,134 51,109,302 84.63
L6709_R 59,658,748 56,872,116 7.11 95.28 721,126 48,296,701 86.19
L6710_R 61,714,914 58,355,650 7.29 95.08 609,771 48,887,646 84.82
F1724_R 54,087,908 50,706,756 6.34 94.55 573,191 39,236,404 78.51
F6709_R 59,471,818 55,779,296 6.97 94.61 679,048 43,773,708 79.69
F6710_R 61,929,858 57,824,398 7.23 94.63 657,150 44,024,598 77.27
O1724_R 62,493,328 58,686,194 7.34 94.47 727,917 45,868,843 79.24
O6709_R 61,744,970 58,780,766 7.35 94.99 706,095 48,277,775 83.33
O6710_R 62,257,620 58,644,500 7.33 94.78 699,080 46,991,269 81.32
L1721_ad 58,134,934 55,036,848 6.88 95.02 657,817 45,941,840 84.67
L1725_ad 52,149,722 49,683,928 6.21 95.07 530,491 42,807,229 87.23
L1723_ad 52,895,016 50,549,914 6.32 95.31 579,622 43,351,355 86.91
F1721_ad 74,115,894 69,624,988 8.7 94.87 842,600 54,239,290 79.11
F1725_ad 65,772,032 61,471,800 7.68 94.76 603,536 45,625,211 75.2
F1723_ad 63,539,320 58,562,688 7.32 94.22 748,009 43,141,371 74.94
O1721_ad 62,882,770 59,623,398 7.45 94.96 723,632 48,555,048 82.65
O1725_ad 58,060,322 54,925,226 6.87 94.87 645,717 43,622,886 80.6
O1723_ad 66,648,496 63,031,132 7.88 94.86 781,846 49,771,569 80.2
  1. Note, Letter L, F and O represent the sample from liver, adipose and ovary, respectively. Letter R and ad represent restricted feeding group and ad libitum feeding group. The numbers between letters represent the sample number.