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Table 1 Comparison of Contig characteristics for the assemblies generated

From: Transcriptome analysis of bolting in A. tequilana reveals roles for florigen, MADS, fructans and gibberellins

Assembly

Trinity v20140413

Trinity 2.2.0 kmer 25

Trinity 2.2.0 kmer 31

Oases 0.2.08 Kmer 31–77

Contigs

371,885

593,947

562,115

490,956

MB assembled

305

415

445

705

Average length

822 nt

698 nt

793 nt

1437 nt

Median

442 nt

404 nt

444 nt

1042 nt

N50

1446 nt

1089 nt

1326 nt

2184 nt

%GC

40.77

41.28

41.34

41.28

Blastx TAIR hits> 70%

10,921

11,370

11,708

12,566

  1. MB Megabases, nt nucleotides
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BMC Genomics

ISSN: 1471-2164

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