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Table 4 Main biological functions associated with DE genes in the OR semispeciesa

From: The effect of Wolbachia on gene expression in Drosophila paulistorum and its implications for symbiont-induced host speciation

Gene Full gene name F abd F head M abd M head
Metabolism - Lipids and fatty acids
 Acsl Acyl-CoA synthetase long-chain     D
 ATPCL ATP citrate lyase    D  
 CDase Ceramidase    D  
 Hmgs HMG Coenzyme A synthase    D  
 Jhe Juvenile hormone esterase    D  
 mag magro    D  
 Sc2 Sc2    D  
 bgm bubblegum    D D
 mino minotaur    D D
 sPLA2 secretory Phospholipase A2    D D
 Unannotated 22 unannotated genes with homologs in D. melanogaster   D/ U D D
 wal walrus   D   
 yip2 yippee interacting protein 2   D   
 FarO Fatty acyl-CoA reductase in oenocytes U    
Metabolism - Purines
 ade2 adenosine 2   D   
 Prat2 Phosphoribosylamidotransferase 2   D   
 Unannotated 2 unannotated genes with homologs in D. melanogaster   D   
 Uro Urate oxidase U    
Metabolism - Amino acids
 Hn Henna     D
 ppl pumpless     D
 Ssadh Succinic semialdehyde dehydrogenase     D
 Unannotated 6 unannotated genes with homologs in D. melanogaster D D   D
 Ahcy Adenosylhomocysteinase   D   D
 Sardh Sarcosine dehydrogenase   D   D
 Shmt Serine hydroxymethyl transferase   D   D
 Spat Serine pyruvate aminotransferase   D   D
 aay astray   D   
 CG8129 no_fullname   D   
 Nmdmc NAD-dependent methylenetetrahydrofolate dehydrogenase   D   
 P5cr-2 Pyrroline-5-carboxylate reductase-like 2   D   
 mnd minidiscs D    
 Gnmt Glycine N-methyltransferase    D  
 Gs2 Glutamine synthetase 2 U    
Metabolism - Carbohydrates and others
 Ilp8 Insulin-like peptide 8 D    
 LManIII Lysosomal alpha-mannosidase III D    
 LManVI Lysosomal alpha-mannosidase VI D    
 AkhR Adipokinetic hormone receptor     D
 Galk Galactokinase     D
 Ilp2 Insulin-like peptide 2     D
 Taldo Transaldolase    D D
 AcCoAS Acetyl Coenzyme A synthase   D D D
 Hex-C Hexokinase C   D D D
 Idgf6 Imaginal disc growth factor 6   D D D
 Mdh1 Malate dehydrogenase 1   D D D
 Unannotated 9 unannotated genes with homologs in D. melanogaster   D D D
 LManII Lysosomal alpha-mannosidase II   D   D
 pug pugilist   D   D
 Pepck Phosphoenolpyruvate carboxykinase   D   
 Amyrel Amyrel    D  
 Cht4 Chitinase 4    D  
 Mal-A4 Maltase A4    D  
 InR Insulin-like receptor    U  
 LManI Lysosomal alpha-mannosidase I    U  
 Cda5 Chitin deacetylase-like 5 U   U  
 kdn knockdown U   U  
 rgn regeneration U   U  
 Idgf4 Imaginal disc growth factor 4 U    
 boss bride of sevenless   U   
Proteolysis
 LUBEL Linear Ubiquitin E3 ligase D   D  
 26-29-p 26-29kD-proteinase    D  
 Ance Angiotensin converting enzyme    D  
 cathD cathD    D  
 iotaTry iotaTrypsin    D  
 CtsB1 Cathepsin B1    D D
 Acer Angiotensin-converting enzyme-related   D   D
 Ance-5 Ance-5   D   D
 Unannotated 30 unannotated genes with homologs in D. melanogaster D/ U D D D
 gol goliath   D   
 Jon99Ci Jonah 99Ci D D   
 Ance-3 Ance-3 D    
 Bace beta-site APP-cleaving enzyme D    
 CG13025 no_fullname U    
 CG2224 no_fullname U    
 dmpd dampened U    
 e(y)2b enhancer of yellow 2b U    
 Jon65Aiv Jonah 65Aiv U    
 Jon66Cii Jonah 66Cii U    
 Npl4 Nuclear protein localization 4 U    
 SP1029 SP1029 U    
 Usp30 Ubiquitin specific protease 30 U    
 epsilonTry epsilonTrypsin U   U  
 Prosalpha4 Proteasome alpha4 subunit    U  
Immunity
 Rel Relish   D   
 Glt Glutactin   D   D
 GNBP-like3 GNBP-like 3   D   D
 MP1 Melanization Protease 1   D   D
 GNBP2 Gram-negative bacteria binding protein 2     D
 Tsf1 Transferrin 1     D
 SPE Spatzle-Processing Enzyme    D D
 Spn28Dc Serpin 28Dc    D D
 yellow-f2 yellow-f2   D D D
 casp caspar    D  
 Hsp27 Heat shock protein 27    D  
 PPO2 Prophenoloxidase 2    D  
 CBP sarcoplasmic calcium-binding protein D    
 Dlip3 Dorsal interacting protein 3 D    
 Hat1 Histone acetyltransferase 1 D    
 heix heixuedian D    
 Unannotated 4 unannotated genes with homologs in D. melanogaster U D U/ D D
 AttA Attacin-A     U
 LysD Lysozyme D    U  
 Lmpt Limpet U   U  
 AttD Attacin-D U U   
 DptB Diptericin B U U   
 AttC Attacin-C U    
 e ebony U    
 edin elevated during infection U    
 Fer2LCH Ferritin 2 light chain homologue U    
 Fuca alpha-L-fucosidase U    
 pirk poor Imd response upon knock-in U    
 Tep3 Thioester-containing protein 3 U    
 Tep4 Thioester-containing protein 4 U    
 yellow-b yellow-b U    
Perception - Olfactory
 Est-6 Esterase 6   D   D
 Obp56a Odorant-binding protein 56a   D   D
 Obp99c Odorant-binding protein 99c   D   D
 Obp56g Odorant-binding protein 56g     D
 Obp56h Odorant-binding protein 56h     D
 Obp83ef Odorant-binding protein 83ef     D
 Obp99b Odorant-binding protein 99b    D D
 Obp56d Odorant-binding protein 56d U   D D
Perception - Vision
 ninaD neither inactivation nor afterpotential D     D
 chp chaoptin   U   
 eys eyes shut   U   
 Fbxl4 F box and leucine-rich-repeat gene 4   U   
 ninaC neither inactivation nor afterpotential C   U   
 ninaG neither inactivation nor afterpotential G   U   
 norpA no receptor potential A   U   
 prom prominin   U   
Pheromone production
 Desat2 Desaturase 2    D  
 FASN1 Fatty acid synthase 1    D  
 FASN2 Fatty acid synthase 2    D  
 Fbp2 Fat body protein 2    D  
 Fbp1 Fat body protein 1   D D  
Reproduction - Females: Cell cycle, germline development
 alphaTub67C alpha-Tubulin at 67C D    
 aPKC atypical protein kinase C D    
 BicC Bicaudal C D    
 cad caudal D    
 CDC45L CDC45L D    
 cort cortex D    
 CycB3 Cyclin B3 D    
 dhd deadhead D    
 egg eggless D    
 exu exuperantia D    
 fs(1)Ya female sterile (1) Young arrest D    
 Fs(2)Ket Female sterile (2) Ketel D    
 fzy fizzy D    
 gcl germ cell-less D    
 Grip84 Gamma-tubulin ring protein 84 D    
 gus gustavus D    
 hop hopscotch D    
 lok loki D    
 Mcm10 Minichromosome maintenance 10 D    
 Mer Merlin D    
 Mos Mos oncogene D    
 nos nanos D    
 pbl pebble D    
 Pen Pendulin D    
 pie pineapple eye D    
 png pan gu D    
 polo polo D    
 slam slow as molasses D    
 spd-2 spindle defective 2 D    
 ssh slingshot D    
 stai stathmin D    
 swa swallow D    
 tor torso D    
 Tre1 Trapped in endoderm 1 D    
 twe twine D    
 Xpc Xeroderma pigmentosum%2C complementation group C D    
 asp abnormal spindle   D   
 cmet CENP-meta   D   
 spn-E spindle E   D   
 Mdr49 Multi drug resistance 49    D  
 Rab1 Rab1    D  
 kug kugelei    U  
 Doa Darkener of apricot U   U  
 bond james bond U    
 c(3)G crossover suppressor on 3 of Gowen U    
 LanA Laminin A U    
Reproduction - Males: Regulation of postmating behavior
 antr antares    D  
 aqrs aquarius    D  
 CHOp24 CHOp24    D  
 Esp Epidermal stripes and patches    D  
 to takeout    D  
 EbpIII Ejaculatory bulb protein III U D D D
Muscular functions
 Fkbp14 FK506-binding protein 14     D
 Mical Molecule interacting with CasL    U  
 SERCA Sarco/endoplasmic reticulum Ca(2+)-ATPase    U  
 sesB stress-sensitive B    U  
 skd skuld    U  
 Actn alpha actinin U   U  
 bt bent U   U  
 clumsy Clumsy U   U  
 fln flightin U   U  
 Mhc Myosin heavy chain U   U  
 Mhcl Myosin heavy chain-like U   U  
 Mlc1 Myosin alkali light chain 1 U   U  
 Mlc2 Myosin light chain 2 U   U  
 Mlp60A Muscle LIM protein at 60A U   U  
 Msp300 Muscle-specific protein 300 kDa U   U  
 shot short stop U   U  
 Tm2 Tropomyosin 2 U   U  
 tn thin U   U  
 TpnC4 Troponin C isoform 4 U   U  
 uif uninflatable U   U  
 Unannotated 28 unannotated genes with homologs in D. melanogaster U   U  
 Unc-89 Unc-89 U   U  
 up upheld U   U  
 vkg viking U   U  
 Zasp52 Z band alternatively spliced PDZ-motif protein 52 U   U  
 Alk Anaplastic lymphoma kinase U    
 CAP CAP U    
 chas chascon U    
 Col4a1 Collagen type IV alpha 1 U    
 eya eyes absent U    
 Grip Glutamate receptor binding protein U    
 if inflated U    
 Mlp84B Muscle LIM protein at 84B U    
 Neurochondrin Neurochondrin U    
 RyR Ryanodine receptor U    
 sals sarcomere length short U    
 TpnC73F Troponin C at 73F U    
 Zasp66 Z band alternatively spliced PDZ-motif protein 66 U    
Translation
 Tfb4 Transcription factor B4 D    
 eEF1gamma eukaryotic translation elongation factor 1 gamma   D   
 eEF2 eukaryotic translation elongation factor 2   D   
 eEF5 eukaryotic translation elongation factor 5   D   
 Rack1 Receptor of activated protein kinase C 1   D   
 sta stubarista   D   
 eEF1alpha1 eukaryotic translation elongation factor 1 alpha 1   D   D
 RpL/ RpS 28 Ribosomal proteins   D D D
 eEF1alpha2 eukaryotic translation elongation factor 1 alpha 2 U   U  
Cytochrome P450
 Cyp311a1 Cyp311a1    D  
 Cyp4e2 Cytochrome P450-4e2    D  
 Cyp6a8 Cytochrome P450-6a8    D  
 Cyp6d2 Cyp6d2    D  
 Cyp12a4 Cyp12a4   D   
 Cyp12d1-p Cyp12d1-p   D   
 Cyp6t1 Cyp6t1   D   
 Cyp309a2 Cyp309a2   D   D
 Cyp6g1 Cyp6g1   D   D
 Cyp4p3 Cyp4p3   D D D
 Cyp6d5 Cyp6d5   D D D
 Cyp4ac2 Cyp4ac2     D
 Cyp4e3 Cytochrome P450-4e3    U  
Yolk proteins
 Yp1 Yolk protein 1     D
 Yp2 Yolk protein 2     D
 Yp3 Yolk protein 3     D
  1. a F Female, M Male, Abd abdomen, D Downregulated in WT, U Upregulated in WT