Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

Table 1 Summary of the genome assembly features of the phlebioid fungal genomes included in the comparative study

Genome features	P. radiata	P. brevispora	P. centrifuga	B. adusta	P. gigantea	P. carnosa	P. chrysosporium
Assembly size (Mbp)	40.41	49.96	34.85	42.73	30.14	46.29	35.15
# of contigs	92	3178	3667	1263	1195	2272	1253
# of scaffolds	92	1645	3022	508	573	1137	232
# of scaffolds ≥ 2 Kbp	92	1645	1652	508	506	1136	204
Scaffold L50	8	12	201	13	72	6	8
Scaffold N50 (Mbp)	1.98	1.31	0.05	1.03	0.12	3.53	1.91
# of gaps	0	1533	645	755	622	1135	1021
Average gene lenght (bp)	1847	1627	1378	1703	1714	1765	1684
Average transcript length (bp)	1463	1274	1134	1388	1380	1446	1401
Average exon length (bp)	227	225	274	248	230	269	259
Average intron length (bp)	72	78	80	71	69	75	66
Average protein length (bp)	488	400	378	406	411	384	408
Exons per gene	6.46	5.66	4.14	5.59	6	5.36	5.41
# of gene models	14629	16170	13785	15473	11891	13937	13602

Data were collected from the JGI MycoCosm (genome.jgi.doe.gov/programs/fungi/index.jsf)

ISSN: 1471-2164