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Fig. 3 | BMC Genomics

Fig. 3

From: PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Fig. 3

Comparison of N. tabacum subgenome classification via polyCRACKER versus progenitor-dependent species binning method. Circos plot showing the 24 pseudomolecules (Nt1–Nt24) in the N. tabacum reference genome. With tracks for (a) chromosome, (b) progenitor-based subgenome classification (c) polyCRACKER subgenome classification (d) coverage of polyCRACKER-identified differential k-mers belonging to N. sylvestris, (e) coverage of N. tomentosiformis differential k-mers, (f) TE density, and (g) gene density. Synteny between pseudomolecules is represented by colored lines within the circle. Tracks b, c, f, and g represent classification labels and densities spanning 250 kb bins, while tracks d and e represent coverage over 75 kb bins. In tracks b-e orange indicates bins that match the T subgenome and blue indicates bins that match the S subgenome

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