Table 3 Dimensionality reduction and clustering techniques used in polyCRACKER for this study
Species | Dimensionality reduction technique | Clustering technique |
|---|---|---|
N. tabacum (including unanchored sequences) | KPCA with cosine kernel | Bayesian Gaussian Mixture Models |
N. tabacum (only anchored sequences) | KPCA with cosine kernel | Spectral Clustering |
Triticum aestivum | KPCA with cosine kernel | Spectral Clustering |