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Table 3 Dimensionality reduction and clustering techniques used in polyCRACKER for this study

From: PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution

Species Dimensionality reduction technique Clustering technique
N. tabacum (including unanchored sequences) KPCA with cosine kernel Bayesian Gaussian Mixture Models
N. tabacum (only anchored sequences) KPCA with cosine kernel Spectral Clustering
Triticum aestivum KPCA with cosine kernel Spectral Clustering