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Fig. 3 | BMC Genomics

Fig. 3

From: Genome-wide RNA pol II initiation and pausing in neural progenitors of the rat

Fig. 3

Antisense transcription in the rat genome. a. A heatmap representing antisense transcription sorted by the distance of divergent peak from the gene TSS, indicated by arrow. Of the 7112 genes, 601 genes that did not contain divergent signal within 600 bp from the TSS were removed from the heatmap. Due to low signal from antisense, and especially convergent transcription, the image was enhanced with Pixelmator to highlight convergent transcription. b. Metagene plot of antisense transcription relative to the reannotated gene TSSs. c. Spearman r correlation matrix of sense and antisense transcription, per replicate. Counts for convergent and divergent transcription were defined on the appropriate strand within +/− 50 nt from the location with the highest signal. d. Weblogo representation of DNA sequence context centered around Convergent (top) and Divergent (bottom) peak locations

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