Table 1 Statistics for sequencing, assembly, and annotation for the nine C. burnetii genomes sequenced in this study. The annotation data for strain Nine Mile RSA493 and corresponding QpH1 plasmid is included for comparison. Note that Cb_D1 was sequenced at 250-bp read length, whereas all other strains were sequenced as 150-bp reads.

2,826,398

563,469 (19.94%)

77.51

42

2,000,727

42.5

2,225/2,017

2,046,051

1,800,928 (88.02%)

106.82

38

2,001,903

42.5

2,223/2,021

2,351,449

2,187,509 (93.03%)

131.80

37

2,003,604

42.5

2,228/2,021

2,150,728

1,170,716 (54.43%)

69.23

42

2,004,954

42.5

2,234/2,024

2,260,768

1,441,913 (63.78%)

88.30

39

2,004,244

42.5

2,230/2,023

2,823,227

2,778,111 (98.40%)

165.78

111

2,010,957

42.5

2,306/2,036

2,219,644

2,104,345 (94.81%)

141.98

111

1,991,633

42.5

2,245/2,018

2,170,264

2,098,022 (96.67%)

140.28

113

1,993,660

42.5

2,257/2,019

1,162,812

1,127,480 (96.96%)

72.77

113

1,994,548

42.5

2,259/2,022

n.a.

n.a.

n.a.

2

2,032,674

42.6

2,217/2,056