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Table 1 Statistics for sequencing, assembly, and annotation for the nine C. burnetii genomes sequenced in this study. The annotation data for strain Nine Mile RSA493 and corresponding QpH1 plasmid is included for comparison. Note that Cb_D1 was sequenced at 250-bp read length, whereas all other strains were sequenced as 150-bp reads.

From: Extensive genome analysis of Coxiella burnetii reveals limited evolution within genomic groups

Name Source QC passed reads Mapped reads (%)a Coverage # contigs Genome size (bp) % GC Predicted # CDS
RAST/Prokka
Cb_D1 Cow placenta 2,826,398 563,469 (19.94%) 77.51 42 2,000,727 42.5 2,225/2,017
Q532 Cow placenta 2,046,051 1,800,928 (88.02%) 106.82 38 2,001,903 42.5 2,223/2,021
Q545 Cow placenta 2,351,449 2,187,509 (93.03%) 131.80 37 2,003,604 42.5 2,228/2,021
Q556 Cow placenta 2,150,728 1,170,716 (54.43%) 69.23 42 2,004,954 42.5 2,234/2,024
Q559 Sheep placenta 2,260,768 1,441,913 (63.78%) 88.30 39 2,004,244 42.5 2,230/2,023
Q540 Goat placenta 2,823,227 2,778,111 (98.40%) 165.78 111 2,010,957 42.5 2,306/2,036
Cb_D2 Goat placenta 2,219,644 2,104,345 (94.81%) 141.98 111 1,991,633 42.5 2,245/2,018
Cb_D8 Goat placenta 2,170,264 2,098,022 (96.67%) 140.28 113 1,993,660 42.5 2,257/2,019
Cb_D10 Goat placenta 1,162,812 1,127,480 (96.96%) 72.77 113 1,994,548 42.5 2,259/2,022
RSA493 + QpH1 Tick n.a. n.a. n.a. 2 2,032,674 42.6 2,217/2,056
  1. a against Nine Mile RSA493 genome (AE016828.2 and AE016829.1 concatenated)