Extensive genome analysis of Coxiella burnetii reveals limited evolution within genomic groups

BMC Genomics

Table 3 Summary of Pan-GWAS results

Trait	Total # of associations	# of associations with 100% Sensitivity/Specificity	Comment
Europe	168	0
Cow tissue	13	0
GG I	83	3	Same results for MST16
GG II_all	148	0	Includes MST33,32,18,25
GG IIa only	34	4	Includes MST18 and MST25
GG IIb only	152	8	Includes MST33 and MST32
MST18	24	1
MST33	110	0
GG III	215	4	Same results for MST20
GG IV	300	8
GG V	114	44	Same results for MST21
GG VI	123	123	Same results for Rodent source and MST-DG

SNPs that were associated with a particular trait were obtained using the Scoary script on Roary output data. Traits analyzed were Genomic Group, MST genotype, Country of origin, Continent of origin, Host, Human disease type. Only traits with significant associations (Benjamini_Hochberg_p < 10^-3) are reported

ISSN: 1471-2164