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Table 1 Summary of the RNA-seq results

From: Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

Infection Sample Replicate Raw reads Clean reads Mapped reads Mapping rate
local EV 1 56,095,920 49,607,102 48,784,974 98.34%
local EV 2 40,783,494 35,461,778 34,878,028 98.35%
local EV 3 59,215,650 50,797,194 49,957,654 98.35%
local TLCV 1 46,414,226 42,273,896 38,070,811 90.06%
local TYLCV 2 40,583,678 34,799,420 31,263,478 89.84%
local TYLCV 3 42,441,872 36,642,412 32,897,690 89.78%
systemic EV 1 45,831,882 42,069,696 41,242,974 98.03%
systemic EV 2 40,432,870 36,748,216 35,955,596 97.84%
systemic EV 3 48,885,308 45,262,860 44,405,978 98.11%
systemic TYLCV 1 47,349,296 43,508,220 42,484,166 97.65%
systemic TYLCV 2 55,797,434 51,761,828 50,618,532 97.79%
systemic TYLCV 3 49,035,824 45,797,334 44,821,767 97.87%