|
Overrepresented in the subset of up-regulated in local infection
|
|
GO:0006351
|
transcription, DNA-templated
|
2046
|
271
|
151.48
|
1.8E-22
|
|
GO:0006310
|
DNA recombination
|
47
|
15
|
3.48
|
2.5E-06
|
|
GO:0005992
|
trehalose biosynthetic process
|
34
|
12
|
2.52
|
3.1E-06
|
|
GO:0048544
|
recognition of pollen
|
69
|
16
|
5.11
|
0.000034
|
|
GO:0006302
|
double-strand break repair
|
16
|
7
|
1.18
|
0.000076
|
|
GO:0006464
|
cellular protein modification process
|
2490
|
237
|
184.35
|
0.00008
|
|
GO:0006012
|
galactose metabolic process
|
23
|
8
|
1.7
|
0.00016
|
|
GO:0006950
|
response to stress
|
873
|
108
|
64.63
|
0.00022
|
|
GO:0016310
|
phosphorylation
|
2148
|
196
|
159.03
|
0.00023
|
|
GO:0006376
|
mRNA splice site selection
|
6
|
4
|
0.44
|
0.0004
|
|
GO:0032968
|
positive regulation of transcription elongation from RNA polymerase II promoter
|
3
|
3
|
0.22
|
0.00041
|
|
GO:0006887
|
exocytosis
|
72
|
14
|
5.33
|
0.00071
|
|
GO:0006635
|
fatty acid beta-oxidation
|
7
|
4
|
0.52
|
0.00087
|
|
GO:0006281
|
DNA repair
|
271
|
38
|
20.06
|
0.00415
|
|
GO:0043562
|
cellular response to nitrogen levels
|
2
|
2
|
0.15
|
0.00548
|
|
GO:0009744
|
response to sucrose
|
2
|
2
|
0.15
|
0.00548
|
|
GO:0045454
|
cell redox homeostasis
|
229
|
28
|
16.95
|
0.00608
|
|
GO:0008272
|
sulfate transport
|
31
|
7
|
2.3
|
0.00653
|
|
GO:0000160
|
phosphorelay signal transduction system
|
102
|
15
|
7.55
|
0.00799
|
|
GO:0006334
|
nucleosome assembly
|
59
|
10
|
4.37
|
0.01074
|
|
GO:0009298
|
GDP-mannose biosynthetic process
|
7
|
3
|
0.52
|
0.0113
|
|
GO:0070966
|
nuclear-transcribed mRNA catabolic process, no-go decay
|
3
|
2
|
0.22
|
0.01562
|
|
GO:0070481
|
nuclear-transcribed mRNA catabolic process, non-stop decay
|
3
|
2
|
0.22
|
0.01562
|
|
GO:0071025
|
RNA surveillance
|
3
|
2
|
0.22
|
0.01562
|
|
GO:0015706
|
nitrate transport
|
3
|
2
|
0.22
|
0.01562
|
|
GO:0010167
|
response to nitrate
|
3
|
2
|
0.22
|
0.01562
|
|
GO:0007064
|
mitotic sister chromatid cohesion
|
8
|
3
|
0.59
|
0.01709
|
|
GO:0006032
|
chitin catabolic process
|
31
|
6
|
2.3
|
0.02419
|
|
GO:0035434
|
copper ion transmembrane transport
|
9
|
3
|
0.67
|
0.02425
|
|
GO:0050832
|
defense response to fungus
|
4
|
2
|
0.3
|
0.02972
|
|
GO:0042742
|
defense response to bacterium
|
4
|
2
|
0.3
|
0.02972
|
|
GO:0007050
|
cell cycle arrest
|
10
|
3
|
0.74
|
0.03277
|
|
GO:0006529
|
asparagine biosynthetic process
|
11
|
3
|
0.81
|
0.04263
|
|
GO:0006020
|
inositol metabolic process
|
11
|
3
|
0.81
|
0.04263
|
|
Overrepresented in the subset of down-regulated in local infection
|
|
GO:0009765
|
photosynthesis, light harvesting
|
74
|
61
|
12.92
|
1E-30
|
|
GO:0007017
|
microtubule-based process
|
254
|
105
|
44.35
|
4.6E-19
|
|
GO:0033014
|
tetrapyrrole biosynthetic process
|
53
|
32
|
9.25
|
3.3E-12
|
|
GO:0015979
|
photosynthesis
|
387
|
169
|
67.57
|
4.9E-12
|
|
GO:0000079
|
regulation of cyclin-dependent protein serine/threonine kinase activity
|
48
|
29
|
8.38
|
3.4E-11
|
|
GO:0006270
|
DNA replication initiation
|
18
|
16
|
3.14
|
7.7E-11
|
|
GO:0072330
|
monocarboxylic acid biosynthetic process
|
171
|
61
|
29.85
|
8.1E-09
|
|
GO:0051258
|
protein polymerization
|
86
|
34
|
15.01
|
8.8E-09
|
|
GO:0006546
|
glycine catabolic process
|
11
|
9
|
1.92
|
5.8E-06
|
|
GO:0005975
|
carbohydrate metabolic process
|
1345
|
320
|
234.82
|
0.000013
|
|
GO:0006073
|
cellular glucan metabolic process
|
142
|
56
|
24.79
|
0.000026
|
|
GO:0006260
|
DNA replication
|
119
|
55
|
20.78
|
0.000027
|
|
GO:0000910
|
cytokinesis
|
24
|
12
|
4.19
|
0.000033
|
|
GO:0006629
|
lipid metabolic process
|
928
|
234
|
162.02
|
0.00028
|
|
GO:0030244
|
cellulose biosynthetic process
|
62
|
22
|
10.82
|
0.00051
|
|
GO:0000096
|
sulfur amino acid metabolic process
|
50
|
18
|
8.73
|
0.00084
|
|
GO:0006656
|
phosphatidylcholine biosynthetic process
|
4
|
4
|
0.7
|
0.00093
|
|
GO:0018160
|
peptidyl-pyrromethane cofactor linkage
|
4
|
4
|
0.7
|
0.00093
|
|
GO:1901070
|
guanosine-containing compound biosynthetic process
|
17
|
9
|
2.97
|
0.00094
|
|
GO:0006418
|
tRNA aminoacylation for protein translation
|
95
|
29
|
16.59
|
0.00125
|
|
GO:0009132
|
nucleoside diphosphate metabolic process
|
135
|
40
|
23.57
|
0.00155
|
|
GO:0006228
|
UTP biosynthetic process
|
15
|
8
|
2.62
|
0.00171
|
|
GO:0006241
|
CTP biosynthetic process
|
15
|
8
|
2.62
|
0.00171
|
|
GO:0006269
|
DNA replication, synthesis of RNA primer
|
5
|
4
|
0.87
|
0.00399
|
|
GO:0045132
|
meiotic chromosome segregation
|
5
|
4
|
0.87
|
0.00399
|
|
GO:0009084
|
glutamine family amino acid biosynthetic process
|
31
|
12
|
5.41
|
0.00416
|
|
GO:1901617
|
organic hydroxy compound biosynthetic process
|
23
|
14
|
4.02
|
0.00531
|
|
GO:0009234
|
menaquinone biosynthetic process
|
3
|
3
|
0.52
|
0.00532
|
|
GO:0016117
|
carotenoid biosynthetic process
|
14
|
7
|
2.44
|
0.00536
|
|
GO:0009065
|
glutamine family amino acid catabolic process
|
12
|
6
|
2.1
|
0.00997
|
|
GO:0046168
|
glycerol-3-phosphate catabolic process
|
6
|
4
|
1.05
|
0.01031
|
|
GO:0015671
|
oxygen transport
|
6
|
4
|
1.05
|
0.01031
|
|
GO:0006801
|
superoxide metabolic process
|
23
|
9
|
4.02
|
0.01161
|
|
GO:0007076
|
mitotic chromosome condensation
|
13
|
6
|
2.27
|
0.01582
|
|
GO:0006166
|
purine ribonucleoside salvage
|
4
|
3
|
0.7
|
0.01849
|
|
GO:0006096
|
glycolytic process
|
114
|
29
|
19.9
|
0.02014
|
|
GO:0046274
|
lignin catabolic process
|
33
|
11
|
5.76
|
0.02045
|
|
GO:0042549
|
photosystem II stabilization
|
7
|
4
|
1.22
|
0.02075
|
|
GO:0042026
|
protein refolding
|
14
|
6
|
2.44
|
0.02366
|
|
GO:0019307
|
mannose biosynthetic process
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0007155
|
cell adhesion
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0045038
|
protein import into chloroplast thylakoid membrane
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0048478
|
replication fork protection
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0007623
|
circadian rhythm
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0010027
|
thylakoid membrane organization
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0006450
|
regulation of translational fidelity
|
2
|
2
|
0.35
|
0.03047
|
|
GO:0030259
|
lipid glycosylation
|
15
|
6
|
2.62
|
0.03373
|
|
GO:0009082
|
branched-chain amino acid biosynthetic process
|
23
|
8
|
4.02
|
0.03537
|
|
GO:0006168
|
adenine salvage
|
5
|
3
|
0.87
|
0.04023
|
|
GO:0010207
|
photosystem II assembly
|
5
|
3
|
0.87
|
0.04023
|
|
GO:0006353
|
DNA-templated transcription, termination
|
5
|
3
|
0.87
|
0.04023
|
|
GO:0006662
|
glycerol ether metabolic process
|
68
|
18
|
11.87
|
0.04094
|
|
Overrepresented in the subset of up-regulated in systemic infection
|
|
GO:0006032
|
chitin catabolic process
|
31
|
7
|
0.78
|
9.1E-06
|
|
GO:0006355
|
regulation of transcription, DNA-templated
|
1764
|
69
|
44.11
|
0.00012
|
|
GO:0005975
|
carbohydrate metabolic process
|
1345
|
63
|
33.64
|
0.00022
|
|
GO:0043562
|
cellular response to nitrogen levels
|
2
|
2
|
0.05
|
0.00062
|
|
GO:0009744
|
response to sucrose
|
2
|
2
|
0.05
|
0.00062
|
|
GO:0016998
|
cell wall macromolecule catabolic process
|
29
|
5
|
0.73
|
0.00069
|
|
GO:0019310
|
inositol catabolic process
|
8
|
3
|
0.2
|
0.00079
|
|
GO:0005992
|
trehalose biosynthetic process
|
34
|
5
|
0.85
|
0.00146
|
|
GO:0015770
|
sucrose transport
|
3
|
2
|
0.08
|
0.00184
|
|
GO:0019953
|
sexual reproduction
|
11
|
3
|
0.28
|
0.00221
|
|
GO:0009607
|
response to biotic stimulus
|
43
|
6
|
1.08
|
0.00271
|
|
GO:0006570
|
tyrosine metabolic process
|
5
|
2
|
0.13
|
0.00594
|
|
GO:0006094
|
gluconeogenesis
|
8
|
2
|
0.2
|
0.01581
|
|
GO:0006952
|
defense response
|
112
|
8
|
2.8
|
0.01862
|
|
GO:0006541
|
glutamine metabolic process
|
23
|
3
|
0.58
|
0.01898
|
|
GO:0000272
|
polysaccharide catabolic process
|
25
|
3
|
0.63
|
0.02376
|
|
GO:0006662
|
glycerol ether metabolic process
|
68
|
5
|
1.7
|
0.02756
|
|
GO:0003333
|
amino acid transmembrane transport
|
46
|
4
|
1.15
|
0.02758
|
|
GO:0006529
|
asparagine biosynthetic process
|
11
|
2
|
0.28
|
0.02956
|
|
GO:0008283
|
cell proliferation
|
11
|
2
|
0.28
|
0.02956
|
|
GO:0044264
|
cellular polysaccharide metabolic process
|
148
|
7
|
3.7
|
0.03961
|
|
GO:0008272
|
sulfate transport
|
31
|
3
|
0.78
|
0.04163
|
|
GO:0006857
|
oligopeptide transport
|
33
|
3
|
0.83
|
0.04874
|
|
Overrepresented in the subset of down-regulated in systemic infection
|
|
GO:0007018
|
microtubule-based movement
|
129
|
11
|
0.7
|
1.2E-10
|
|
GO:0000079
|
regulation of cyclin-dependent protein serine/threonine kinase activity
|
48
|
7
|
0.26
|
7.2E-09
|
|
GO:0007067
|
mitotic nuclear division
|
51
|
5
|
0.28
|
0.0001
|
|
GO:0016114
|
terpenoid biosynthetic process
|
30
|
2
|
0.16
|
0.0116
|
|
GO:0006265
|
DNA topological change
|
30
|
2
|
0.16
|
0.0116
|
|
GO:0007094
|
mitotic spindle assembly checkpoint
|
3
|
1
|
0.02
|
0.0163
|
|
GO:0006952
|
defense response
|
112
|
3
|
0.61
|
0.0235
|
|
GO:0009813
|
flavonoid biosynthetic process
|
6
|
1
|
0.03
|
0.0323
|
|
GO:0030244
|
cellulose biosynthetic process
|
62
|
2
|
0.34
|
0.0452
|
|
Overrepresented in the subset of up-regulated genes common to local and systemic infections
|
|
GO:0043562
|
cellular response to nitrogen levels
|
2
|
2
|
0.01
|
0.000041
|
|
GO:0009744
|
response to sucrose
|
2
|
2
|
0.01
|
0.000041
|
|
GO:0005992
|
trehalose biosynthetic process
|
34
|
4
|
0.22
|
0.000066
|
|
GO:0006094
|
gluconeogenesis
|
8
|
2
|
0.05
|
0.0011
|
|
GO:0019310
|
inositol catabolic process
|
8
|
2
|
0.05
|
0.0011
|
|
GO:0006529
|
asparagine biosynthetic process
|
11
|
2
|
0.07
|
0.0022
|
|
GO:0006355
|
regulation of transcription, DNA-templated
|
1764
|
21
|
11.37
|
0.0043
|
|
GO:0007205
|
protein kinase C-activating G-protein coupled receptor signaling pathway
|
24
|
2
|
0.15
|
0.0104
|
|
GO:0006659
|
phosphatidylserine biosynthetic process
|
3
|
1
|
0.02
|
0.0192
|
|
GO:0042742
|
defense response to bacterium
|
4
|
1
|
0.03
|
0.0255
|
|
GO:0006562
|
proline catabolic process
|
4
|
1
|
0.03
|
0.0255
|
|
GO:0050832
|
defense response to fungus
|
4
|
1
|
0.03
|
0.0255
|
|
GO:0006570
|
tyrosine metabolic process
|
5
|
1
|
0.03
|
0.0318
|
|
GO:0003333
|
amino acid transmembrane transport
|
46
|
2
|
0.3
|
0.0355
|
|
GO:0009064
|
glutamine family amino acid metabolic process
|
57
|
3
|
0.37
|
0.0453
|
|
Overrepresented in the subset of down-regulated genes common to local and systemic infections
|
|
GO:0007018
|
microtubule-based movement
|
129
|
10
|
0.43
|
1.4E-11
|
|
GO:0000079
|
regulation of cyclin-dependent protein serine/threonine kinase activity
|
48
|
7
|
0.16
|
2.1E-10
|
|
GO:0007067
|
mitotic nuclear division
|
51
|
5
|
0.17
|
0.000014
|
|
GO:0006265
|
DNA topological change
|
30
|
2
|
0.1
|
0.0045
|
|
GO:0007094
|
mitotic spindle assembly checkpoint
|
3
|
1
|
0.01
|
0.0099
|
|
GO:0030244
|
cellulose biosynthetic process
|
62
|
2
|
0.21
|
0.0181
|
|
GO:0006606
|
protein import into nucleus
|
12
|
1
|
0.04
|
0.0392
|
