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Table 3 GO enrichment of DEGs common to systemic infections by TYLCV and TbSCV in N. benthamiana. Over-represented GO categories (Biological Process Ontology) in the different subsets of DEGs represented in Fig. 6

From: Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana

GO.ID Term Annotated Significant Expected p value
Y35A_up+up
 GO:0006108 malate metabolic process 36 3 0.13 0.00027
 GO:0046470 phosphatidylcholine metabolic process 19 2 0.07 0.00197
 GO:0000272 polysaccharide catabolic process 25 2 0.09 0.00341
 GO:0016998 cell wall macromolecule catabolic process 29 2 0.1 0.00457
 GO:0006032 chitin catabolic process 31 2 0.11 0.00521
 GO:0045454 cell redox homeostasis 229 4 0.8 0.00835
 GO:0050832 defense response to fungus 4 1 0.01 0.01386
 GO:0042742 defense response to bacterium 4 1 0.01 0.01386
 GO:0046373 L-arabinose metabolic process 5 1 0.02 0.0173
 GO:1902358 sulfate transmembrane transport 7 1 0.02 0.02413
 GO:0019953 sexual reproduction 11 1 0.04 0.03767
Y35A_down+down
 GO:0016114 terpenoid biosynthetic process 30 2 0.02 0.00028
 GO:0009813 flavonoid biosynthetic process 6 1 0 0.00498
 GO:0006012 galactose metabolic process 23 1 0.02 0.01897
Y35AB_up+up
 GO:0006355 regulation of transcription, DNA-templated 1764 27 11.74 0.000032
 GO:0006529 asparagine biosynthetic process 11 2 0.07 0.0023
 GO:0006952 defense response 112 4 0.75 0.0067
 GO:0046470 phosphatidylcholine metabolic process 19 2 0.13 0.007
 GO:0006571 tyrosine biosynthetic process 3 1 0.02 0.0198
 GO:0005992 trehalose biosynthetic process 34 2 0.23 0.0215
 GO:0005975 carbohydrate metabolic process 1345 19 8.95 0.0215
 GO:0006979 response to oxidative stress 257 5 1.71 0.0288
 GO:0006421 asparaginyl-tRNA aminoacylation 5 1 0.03 0.0328
 GO:0046373 L-arabinose metabolic process 5 1 0.03 0.0328
 GO:0009607 response to biotic stimulus 43 2 0.29 0.0332
Y35AB_down+down
 GO:0016114 terpenoid biosynthetic process 30 2 0.03 0.00032
 GO:0009813 flavonoid biosynthetic process 6 1 0.01 0.00529