Table 3 GO enrichment of DEGs common to systemic infections by TYLCV and TbSCV in N. benthamiana. Over-represented GO categories (Biological Process Ontology) in the different subsets of DEGs represented in Fig. 6

 GO:0006108

malate metabolic process

36

3

0.13

0.00027

 GO:0046470

phosphatidylcholine metabolic process

19

2

0.07

0.00197

 GO:0000272

polysaccharide catabolic process

25

2

0.09

0.00341

 GO:0016998

cell wall macromolecule catabolic process

29

2

0.1

0.00457

 GO:0006032

chitin catabolic process

31

2

0.11

0.00521

 GO:0045454

cell redox homeostasis

229

4

0.8

0.00835

 GO:0050832

defense response to fungus

4

1

0.01

0.01386

 GO:0042742

defense response to bacterium

4

1

0.01

0.01386

 GO:0046373

L-arabinose metabolic process

5

1

0.02

0.0173

 GO:1902358

sulfate transmembrane transport

7

1

0.02

0.02413

 GO:0019953

sexual reproduction

11

1

0.04

0.03767

 GO:0016114

terpenoid biosynthetic process

30

2

0.02

0.00028

 GO:0009813

flavonoid biosynthetic process

6

1

0

0.00498

 GO:0006012

galactose metabolic process

23

1

0.02

0.01897

 GO:0006355

regulation of transcription, DNA-templated

1764

27

11.74

0.000032

 GO:0006529

asparagine biosynthetic process

11

2

0.07

0.0023

 GO:0006952

defense response

112

4

0.75

0.0067

 GO:0046470

phosphatidylcholine metabolic process

19

2

0.13

0.007

 GO:0006571

tyrosine biosynthetic process

3

1

0.02

0.0198

 GO:0005992

trehalose biosynthetic process

34

2

0.23

0.0215

 GO:0005975

carbohydrate metabolic process

1345

19

8.95

0.0215

 GO:0006979

response to oxidative stress

257

5

1.71

0.0288

 GO:0006421

asparaginyl-tRNA aminoacylation

5

1

0.03

0.0328

 GO:0046373

L-arabinose metabolic process

5

1

0.03

0.0328

 GO:0009607

response to biotic stimulus

43

2

0.29

0.0332

 GO:0016114

terpenoid biosynthetic process

30

2

0.03

0.00032

 GO:0009813

flavonoid biosynthetic process

6

1

0.01

0.00529