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Table 1 Genome characteristics of sequenced strains and related isolates

From: Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae

Genome Name/Sample Name

IMG Genome ID

Genome Size

Gene Count

CRISPR Count

GC %

CDS Count

CDS %

rRNA Count

Pseudogene Count

Horizontally Transferred Count

Horizontally Transferred %

Lifestyle

Acetobacteraceae bacterium 868

2734482192

2107276

2111

1

43

2032

96.26

15

14

342

16.2

Host associated

Acetobacteraceae bacterium 880

2716885010

1923586

1874

2

43

1798

95.94

15

7

276

14.73

Host associated

Roseomonas rosea DSM 14916

2585427600

5342582

5093

0

71

5027

98.7

10

NA

60

1.18

Free-living

Saccharibacter sp. AM169

2617271045

1978091

1785

2

59

1723

96.53

6

NA

37

2.07

Host associated

Gluconobacter oxydans 621H

637000122

2922384

2742

0

61

2664

97.16

12

NA

3

0.11

Free-living

Acetobacter aceti ATCC 23746

2516653054

3690768

3510

3

57

3442

98.06

9

130

195

5.56

Free-living

Acetobacter tropicalis DmCS_006

2609460235

3746694

3494

2

55

3436

98.34

3

NA

81

2.32

Host associated

Gluconobacter japonicus R-49117

2684622537

3151336

3071

0

56

3015

98.18

3

NA

56

1.82

Free-living

Acetobacter tropicalis NBRC 16470

2667527850

3500391

3248

3

56

3190

98.21

3

NA

75

2.31

Free-living

Acetobacter pomorum DmCS_004

2617271320

2843884

2750

2

52

2693

97.93

3

NA

19

0.69

Host associated

Acetobacter malorum LMG 1552

2713897234

344275

3250

0

58

3194

98.28

3

NA

62

1.91

Free-living

Azospirillum brasilense FP2

2551306490

6885108

6972

3

68

6889

98.81

2

NA

9

0.13

Free-living

Escherichia coli 100269_aEPEC

2698536335

5098872

5163

0

50

4948

95.84

10

NA

3

0.06

Free-living

Asaia platycodi SF2.1

2574180177

3528906

3054

NA

60

3005

98.4

49

44

184

5.89

Host associated

Acetobacter malorum DmCS_005

2597490292

3512607

3125

5

57

3066

98.11

4

NA

3

0.10

Host associated

  1. Entries in bold indicate bacterial strains whose genomes were fully sequened in this study