From: hg19KIndel: ethnicity normalized human reference genome
Class | Total number of variants in 1000 genome phase-3 dataset w.r.t hg19 | Filtered and replaced in hg19 (Alternate AF > 0.5in phase-31,000 genome dataset) | ||
---|---|---|---|---|
Total | Multi-allelic | Total | Multi-allelic | |
SNP | 81,377,202 | 274,425 | 1,888,578 | 16,487 |
INDEL | 3,299,133 | 103,598 | 305,634 | 14,732 |
SNP, INDEL | 65,871 | 65,871 | 3401 | 3401 |
MNP | 123 | 0 | 2 | 0 |
SV | 59,551 | 0 | 535 | 0 |