Skip to main content

Table 3 List of deleted and flanking genes present in rpr9 deletion region on barley chromosome 3H

From: Characterization of genes required for both Rpg1 and rpg4-mediated wheat stem rust resistance in barley

Gene Name Start End Annotation Exome capture reads Ratio
Q21861 rpr9 (rpr9/Q21861)
HORVU3Hr1G074850 560,316,839 560,326,306 plastid transcriptionally active 12 2574 2264 0.879
HORVU3Hr1G074910 560,447,102 560,448,070 O-acyltransferase (WSD1-like) family protein 13 10 0.769
HORVU3Hr1G074920 560,659,267 560,660,724 Peroxidase superfamily protein 4075 3 0.001
aHORVU3Hr1G074930 560,737,798 560,739,850 Leucine-rich repeat receptor-like protein kinase (LRK) family protein 0 0 0
HORVU3Hr1G074940 560,884,155 560,885,580 Peroxidase superfamily protein 4075 7 0.001
HORVU3Hr1G074950 560,902,589 560,904,079 Peroxidase superfamily protein 5063 5 0.001
HORVU3Hr1G074960 560,934,358 560,935,865 Peroxidase superfamily protein 4835 269 0.056
HORVU3Hr1G074970 561,006,112 561,007,794 SKP1-like 9 8 0 0
HORVU3Hr1G075000 561,254,447 561,255,632 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic 0 0 0
HORVU3Hr1G075010 561,255,634 561,256,481 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic 0 0 0
HORVU3Hr1G075030 561,299,425 561,299,615 RNAase 0 0 0
HORVU3Hr1G075040 561,302,733 561,304,797 L-tyrosine decarboxylase 1588 12 0.007
HORVU3Hr1G075050 561,432,288 561,438,786 F-box family protein 945 2 0.002
HORVU3Hr1G075060 561,500,252 561,501,311 Octicosapeptide/Phox/Bem1p family protein 70 93 1.32
HORVU3Hr1G075070 561,614,572 561,615,955 LEA protein-related 361 384 1.06
  1. List of eleven annotated high confidence genes present in the rpr9 deletion region on barley chromosome 3H along with flanking genes in BARLEX database. The table contains the gene name, annotated physical sequence position for start and end positions for the coding determining sequence (CDS) on barley chromosome 3H, exome capture reads for Q21861 and the rpr9 mutant with their ratio
  2. adenotes the mis-annotated LRK gene present in the deletion region under the rpr9 QTL