Skip to main content

Table 5 Performance of subcellular localization predictors on mpHTP

From: Benchmarking subcellular localization and variant tolerance predictors on membrane proteins

  BUSCA CELLO DeepLoc1.0 LocTree3 MultiLoc2 SubCons Wolf PSORT
TP 3766 3101 4242 3877 1187 2776 4016
FP 206 153 257 179 104 103 280
TN 4156 5041 4372 5110 4895 3779 5082
FN 784 1944 427 1481 3467 1279 1398
Sensitivity 0.86 0.60 0.93 0.73 0.24 0.71 0.75
Specificity 0.95 0.97 0.94 0.97 0.98 0.97 0.95
PPV 0.95 0.95 0.94 0.96 0.92 0.96 0.93
NPV 0.84 0.72 0.91 0.78 0.58 0.75 0.78
ACC 0.89 0.79 0.93 0.84 0.63 0.83 0.84
MCC 0.78 0.63 0.85 0.71 0.34 0.68 0.70
OPM 0.72 0.53 0.80 0.62 0.30 0.60 0.62