Table 5 Performance of subcellular localization predictors on mpHTP
From: Benchmarking subcellular localization and variant tolerance predictors on membrane proteins
| Â | BUSCA | CELLO | DeepLoc1.0 | LocTree3 | MultiLoc2 | SubCons | Wolf PSORT |
|---|---|---|---|---|---|---|---|
TP | 3766 | 3101 | 4242 | 3877 | 1187 | 2776 | 4016 |
FP | 206 | 153 | 257 | 179 | 104 | 103 | 280 |
TN | 4156 | 5041 | 4372 | 5110 | 4895 | 3779 | 5082 |
FN | 784 | 1944 | 427 | 1481 | 3467 | 1279 | 1398 |
Sensitivity | 0.86 | 0.60 | 0.93 | 0.73 | 0.24 | 0.71 | 0.75 |
Specificity | 0.95 | 0.97 | 0.94 | 0.97 | 0.98 | 0.97 | 0.95 |
PPV | 0.95 | 0.95 | 0.94 | 0.96 | 0.92 | 0.96 | 0.93 |
NPV | 0.84 | 0.72 | 0.91 | 0.78 | 0.58 | 0.75 | 0.78 |
ACC | 0.89 | 0.79 | 0.93 | 0.84 | 0.63 | 0.83 | 0.84 |
MCC | 0.78 | 0.63 | 0.85 | 0.71 | 0.34 | 0.68 | 0.70 |
OPM | 0.72 | 0.53 | 0.80 | 0.62 | 0.30 | 0.60 | 0.62 |