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Table 3 Variant calling results: Breakpoint based (LUMPY) only: after default filtering

From: A clinically validated whole genome pipeline for structural variant detection and analysis

bucket TP FP FN sensitivity
100–1000 2209 142 989 0.69074
1000-10,000 570 16 104 0.84570
10,000–100,000 35 5 15 0.7
100,000+ 4 0 1 0.8