Table 7 List of gene IDs which are potentially involved in ToCV virus transmission and have genetic variants between Asia II 1 and MEAM 1

Bta08892

70 kDa heat shock protein

Frame shift

Scaffold3328:264318

Bta01665

AAA-ATPase-like domain-containing protein

frame shift

Scaffold1224:5022892

Bta12603

AAA-ATPase-like domain-containing protein

stop gain

Scaffold597:2078628

Bta05346

Afadin, putative

stop lost

Scaffold199:1272506

Bta11978

Alpha-glucosidase

Frame shift

Scaffold521:859550

Bta01804

Ankyrin repeat and LEM domain-containing protein

Frame shift

Scaffold123:4405622

Bta01772

Cathepsin B

Frame shift

Scaffold123:2832350

Bta07402

Cathepsin B

Frame shift

Scaffold2816:1342943

Bta02120

Cathepsin L-like protease

Frame shift

Scaffold1261:554552

Bta02560

Cathepsin L-like protease

Frame shift

Scaffold132:3684567

Bta07152

Cathepsin L-like protease

Frame shift

Scaffold2737:56518

Bta06739

Cation transport regulator-like protein 1

Frame shift

Scaffold2605:2569958

Bta08022

CG13675, isoform D

Frame shift

Scaffold3040:3058531

Bta04412

CG14375

Frame shift

Scaffold165:195426

Bta03710

CG17612, isoform A

splice acceptor variant

Scaffold155:194033

Bta11746

CG7120, isoform F

splice donor, frame shift

Scaffold52:4009995

Bta10928

Chromodomain Y-like protein 2

Frame shift

Scaffold477:1214758

Bta12891

Citron Rho-interacting kinase

Frame shift

Scaffold613:2332964

Bta02184

Cystatin

frame shift

Scaffold128:1309680

Bta07162

DDB1-and CUL4-associated factor

start loss,stop gain,

Scaffold2737:410077, Scaffold2737:419749

Bta07434

DNA-directed RNA polymerase, omega subunit family protein

stop gain, frame shift

Scaffold2890:209245

Bta14689

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

splice acceptor variant

Scaffold811:2521172

Bta15680

E3 ubiquitin-protein ligase TTC3

Frame shift

Scaffold988:3252798

Bta03681

Eukaryotic translation initiation factor 3 subunit A

Frame shift

Scaffold1512:1481746

Bta14560

Galectin

Frame shift

Scaffold809:3964391

Bta10009

General transcription factor 3C polypeptide 2

Frame shift

Scaffold382:2610001

Bta04387

GH16255p

splice acceptor variant

Scaffold1647:2597569

Bta00770

GK11989

stop lost, frame shift

Scaffold1103:753116

Bta01833

Klarsicht, isoform E

stop gain, frame shift

Scaffold123:5600056

Bta09051

Laminin subunit beta-1

stop gain

Scaffold338:1218247

Bta01704

Loquacious

Frame shift

Scaffold123:255863

Bta03800

Lysosomal-trafficking regulator

Frame shift

Scaffold155:4253425

Bta05467

Major royal jelly-related protein

stop lost

Scaffold199:6871677

Bta05773

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

stop gain

Scaffold2229:151223

Bta15454

Neuroendocrine convertase 1

Frame shift

Scaffold959:3096344

Bta10191

Nidogen-2

stop gain

Scaffold3978:2723

Bta13257

Protein patched

Frame shift

Scaffold641:259689

Bta15368

Protein phosphatase 1 L

Frame shift

Scaffold959:15812

Bta13589

Protein unc-45-like protein A

Frame shift

Scaffold651:2187902

Bta02051

Regucalcin

start loss

Scaffold1240:111531

Bta10926

Replication factor-a protein 1

Frame shift

Scaffold477:1149858

Bta12190

Sortilin-related receptor

Frame shift

Scaffold545:2426274

Bta02847

Sulfotransferase

stop gain

Scaffold14:67127

Bta08229

Symplekin

splice acceptor variant

Scaffold317:609334

Bta07946

Terribly reduced optic lobes, isoform AN

splice acceptor

Scaffold3040:556936

Bta05242

Transcriptional protein SWT1

Frame shift

Scaffold1898:321532

Bta09856

Trehalase

stop gain

Scaffold374:3016858

Bta03298

Trypsin-like serine protease

stop lost

Scaffold147:7182519

Bta09090

Tudor domain protein

stop lost

Scaffold338:1990664

Bta08596

Tudor domain-containing protein 1

Frame shift

Scaffold322:4722919

Bta03892

Ubiquitin carboxyl-terminal hydrolase

start lost

Scaffold1580:568946

Bta01518

Unknown protein

stop gain

Scaffold1214:734963

Bta01571

Unknown protein

Frame shift

Scaffold1224:1139169

Bta01615

Unknown protein

Frame shift

Scaffold1224:3224397

Bta02665

Unknown protein

Frame shift

Scaffold1339:520464

Bta02767

Unknown protein

Frame shift

Scaffold137:1379435

Bta02836

Unknown protein

Frame shift

Scaffold139:1098948

Bta02920

Unknown protein

Frame shift

Scaffold14:3202002

Bta03301

Unknown protein

stop gain, frame shift

Scaffold147:7328434

Bta03426

Unknown protein

stop gain

Scaffold1496:690294

Bta03435

Unknown protein

Frame shift

Scaffold1496:1047497

Bta04551

Unknown protein

Frame shift

Scaffold165:5163918

Bta04829

Unknown protein

Frame shift

Scaffold17:652047

Bta04921

Unknown protein

Frame shift

Scaffold17:652047

Bta05143

Unknown protein

stop gain

Scaffold18461:1072084

Bta05268

Unknown protein

stop gain, frame shift

Scaffold1971:32055

Bta05546

Unknown protein

Frame shift

Scaffold2013:237841

Bta05683

Unknown protein

Frame shift

Scaffold2124:427571

Bta05758

Unknown protein

Frame shift

Scaffold2225:1204179

Bta05761

Unknown protein

stop gain

Scaffold2225:1258041

Bta05893

Unknown protein

stop gain

Scaffold226:1397519

Bta06123

Unknown protein

splice donor

Scaffold231:3876649

Bta07727

Unknown protein

Frame shift

Scaffold300:708005

Bta07839

Unknown protein

stop gain

Scaffold300:4527825

Bta08000

Unknown protein

stop gain, frame shift

Scaffold3040:2567504

Bta08242

Unknown protein

Frame shift

Scaffold317:1074159

Bta08287

Unknown protein

stop gain

Scaffold320:265593

Bta08375

Unknown protein

stop gain

Scaffold320:3813827

Bta08462

Unknown protein

Frame shift

Scaffold322:385722

Bta08745

Unknown protein

Frame shift

Scaffold325:3471439

Bta10862

Unknown protein

splice acceptor variant

Scaffold471:791307

Bta11840

Unknown protein

Frame shift

Scaffold52:7764853

Bta12278

Unknown protein

stop gain

Scaffold562:2009445

Bta12668

Unknown protein

start lost

Scaffold607:1307735

Bta12727

Unknown protein

Frame shift

Scaffold607:2833985

Bta13235

Unknown protein

Frame shift

Scaffold64:63239

Bta13327

Unknown protein

splice donor

Scaffold641:3718364

Bta13745

Unknown protein

Frame shift

Scaffold657:1097200

Bta13859

Unknown protein

stop gain

Scaffold67:1393372

Bta13954

Unknown protein

Frame shift

Scaffold699:810303

Bta15302

Unknown protein

Frame shift

Scaffold942:1732675

Bta15415

Unknown protein

Frame shift

Scaffold959:1270849

Bta07758

Zinc finger protein

Frame shift

Scaffold300:1778386

Bta06175

Zinc finger protein 227

stop gain

Scaffold232:1822927

Bta08766

Zinc finger protein 34

Frame shift

Scaffold325:3972542

Bta11305

Zinc finger protein 845

Frame shift

Scaffold493:2884873