Construction and analysis of degradome-dependent microRNA regulatory networks in soybean

BMC Genomics

Table 5 Summary and description of employed datasets

Description	GEO_accession	Tissues	Developmental_stage/Treatment	Cultivar	Reference
sRNA-seq	GSM769282	Root	14 days after germination	Williams 82	Genes Dev 2011 Dec 1;25(23):2540–53.
sRNA-seq	GSM1419349	Leaf	water 30 min	Williams 82	Plant Cell 2014 Dec;26(12):4584–601.
sRNA-seq	GSM769285	Seed	15 days after flowering	Williams 82	Genes Dev 2011 Dec 1;25(23):2540–53.
sRNA-seq	GSM543394	immature seed coat	seeds of 50–75 mg fresh weight	Williams 82	Plant Cell 2009 Oct;21(10):3063–77
sRNA-seq	GSM543395	immature cotyledon	seeds of 50–75 mg fresh weight	Williams 82	Plant Cell 2009 Oct;21(10):3063–77
Degradome	GSM647200	Seed	15 days after flowering	Heinong44	BMC Plant Biol2011 Jan 10;11:5
Degradome	GSM825574	root,stem,leaf,inflorescence	four-week-old seedlings	Williams 82	Public on Nov 02, 2011
Degradome	GSM1213430	Root	2 days after transplant	Williams 82	Addo-Quaye et al.,2008
Degradome	GSM848963	Cotyledon	early maturation green 25–50 mg	Williams 82	BMC Genomics 2012 Jul 16;13:310.
Degradome	GSM848964	seed_coat	early maturation green 25–50 mg	Williams 82	BMC Genomics 2012 Jul 16;13:310.
Degradome	GSM1419390	Leaves	well-watered	IA3023	Plant Cell 2014 Dec;26(12):4584–601.
Degradome	GSM1419391	Leaves	Drought stressed	IA3023	Plant Cell 2014 Dec;26(12):4584–601.

ISSN: 1471-2164