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Table 5 Five QTL hotspots/clusters detected in LM6 and ZM6 RIL population under natural and artificial conditions

From: Whole-genome mapping identified novel “QTL hotspots regions” for seed storability in soybean (Glycine max L.)

QTL cluster name Chr_Bin range Physical range (bp) QTL Name LOD Additive effect R2 (%)
Cluster-03 Chr03_bin228-bin232 (LM6) 00000001–00533669 qrGR-3-1 3.37 0.06 8.94
qrFW-3-1 3.5 0.04 8.51
Cluster-05/ QTL hotspot B Chr05_bin502-bin513 (LM6) Chr05_bin571-bin572 (ZM6) 31,127,720–35,178,169 qGR-5-1 3.63 −0.05 11.13
qGR-5-2 5.07 −0.05 15.05
qFW-5-1 4.46 −2.45 13.56
qGR-5-3 6.64 0.06 16.76
qFW-5-2 3.25 1.87 8.57
qrSL-5-1 4.09 0.01 11.78
Cluster-17.1 Chr17_bin1864-bin1873 (LM6) 77,540,160–10,193,909 qGR-17–1 3.49 −0.06 12.98
qSL-17–1 4.77 −1.04 14.53
qSL-17-2 4.44 −1.04 15.08
Cluster-17.2/ QTL hotspot A Chr17_bin1924-bin1931 (LM6) Chr17_bin2176-bin2177 (ZM6) 39,676,735–41,073,260 qrGR-17–1 7.05 0.09 19.11
qrGR-17-2 8.65 0.09 22.64
qrFW-17–1 6.41 0.07 19.05
qrFW-17-2 8.33 0.07 23.16
qrGR-17-3 4.26 −0.05 10.56
qrSL-17–1 3.09 −0.03 7.38
qrFW-17-2 4.26 −0.04 11.44
Cluster-18 Chr18_bin2218-bin2229 (ZM6) 05407986–07447039 qrGR-18–1 6.61 0.07 16.03
qrSL-18–1 3.05 0.03 7.38
qrSL-18-2 3.01 0.03 7.30