Table 5 Five QTL hotspots/clusters detected in LM6 and ZM6 RIL population under natural and artificial conditions
QTL cluster name | Chr_Bin range | Physical range (bp) | QTL Name | LOD | Additive effect | R2 (%) |
|---|---|---|---|---|---|---|
Cluster-03 | Chr03_bin228-bin232 (LM6) | 00000001–00533669 | qrGR-3-1 | 3.37 | 0.06 | 8.94 |
qrFW-3-1 | 3.5 | 0.04 | 8.51 | |||
Cluster-05/ QTL hotspot B | Chr05_bin502-bin513 (LM6) Chr05_bin571-bin572 (ZM6) | 31,127,720–35,178,169 | qGR-5-1 | 3.63 | −0.05 | 11.13 |
qGR-5-2 | 5.07 | −0.05 | 15.05 | |||
qFW-5-1 | 4.46 | −2.45 | 13.56 | |||
qGR-5-3 | 6.64 | 0.06 | 16.76 | |||
qFW-5-2 | 3.25 | 1.87 | 8.57 | |||
qrSL-5-1 | 4.09 | 0.01 | 11.78 | |||
Cluster-17.1 | Chr17_bin1864-bin1873 (LM6) | 77,540,160–10,193,909 | qGR-17–1 | 3.49 | −0.06 | 12.98 |
qSL-17–1 | 4.77 | −1.04 | 14.53 | |||
qSL-17-2 | 4.44 | −1.04 | 15.08 | |||
Cluster-17.2/ QTL hotspot A | Chr17_bin1924-bin1931 (LM6) Chr17_bin2176-bin2177 (ZM6) | 39,676,735–41,073,260 | qrGR-17–1 | 7.05 | 0.09 | 19.11 |
qrGR-17-2 | 8.65 | 0.09 | 22.64 | |||
qrFW-17–1 | 6.41 | 0.07 | 19.05 | |||
qrFW-17-2 | 8.33 | 0.07 | 23.16 | |||
qrGR-17-3 | 4.26 | −0.05 | 10.56 | |||
qrSL-17–1 | 3.09 | −0.03 | 7.38 | |||
qrFW-17-2 | 4.26 | −0.04 | 11.44 | |||
Cluster-18 | Chr18_bin2218-bin2229 (ZM6) | 05407986–07447039 | qrGR-18–1 | 6.61 | 0.07 | 16.03 |
qrSL-18–1 | 3.05 | 0.03 | 7.38 | |||
qrSL-18-2 | 3.01 | 0.03 | 7.30 |