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Fig. 3 | BMC Genomics

Fig. 3

From: Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data

Fig. 3

Overview of the two main pipelines in this work: 1) Integration and mapping CLIP experiments to splicing regions and 2) predicting context-specific splicing factors. The tasks done in both pipelines are represented by colors: identifying the transcriptome binding sites of RBPs using previous CLIP experiments (orange); construction of a matrix containing information of specific events for each splicing factor (blue); calculating alternative splicing events from RNA-seq data or microarray data (green); and combining both results with a statistical pipeline to obtain a ranking of splicing factors (black)

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