Experiment | RBP | Ranking by CLIP p-value (out of 195) | Differentially spliced hits (Expected) | Differentially spliced hits (Found) | CLIP p-value (Fisher) | Expression Fold change (log2) | limma adjusted p-value | Ranking by PWM p-value (out of 123) | PWM p-value |
---|---|---|---|---|---|---|---|---|---|
KD-SRSF1 | SRSF1 | 10 | 396 | 620 | 5 .16E-24 | −1 .54 | 9 .18E-29 | 13 | 8.32E-04 |
LIN28B | 20 | 561 | 747 | 3 .75E−15 | 0 .96 | 7 .76E-14 | NA | NA | |
UCHL5 | 27 | 261 | 384 | 1 .03E-13 | -1 .52 | 7 .61E-21 | NA | NA | |
SF3A3 | 37 | 266 | 324 | 7 .03E-11 | −0 .83 | 2 .77E-22 | NA | NA | |
HNRNPD | 46 | 69 | 164 | 2 .94E− 08 | −0 .63 | 1 .49E-16 | 15 | 1 .11E−03 | |
EFTUD2 | 62 | 454 | 520 | 1 .29E-05 | -0 .66 | 2 .69E−19 | NA | NA | |
TAF15 | 115 | 83 | 149 | 4 .75E− 02 | −0 .78 | 5 .05E-17 | NA | NA | |
KD-FUS | FUS | 11 | 375 | 465 | 2 .35E−09 | -1 .09 | 9 .77E− 02 | 112 | N.S. |
LIN28A | 25 | 163 | 219 | 1 .78E− 06 | 0 .69 | 1 .43E-01 | 1 | 9 .54E-02 | |
FBL | 56 | 49 | 73 | 3 .12E-04 | -0 .81 | 3 .10E-01 | NA | NA | |
YBX3 | 64 | 145 | 182 | 4 .94E-04 | -0 .79 | 2 .08E-01 | NA | NA | |
CPSF2 | 109 | 40 | 52 | 2 .58E-02 | -0 .70 | 9 .91E-02 | NA | NA | |
KD-TARDBP | TARDBP | 20 | 688 | 746 | 2 .10E-05 | -0 .87 | 2 .16E-02 | 13 | 1 .30E-02 |
RBM22 | 26 | 160 | 205 | 6 .69E-05 | 0 .64 | 1 .93E-02 | NA | NA | |
PTBP2 | 58 | 144 | 174 | 3 .74E-03 | -0 .60 | 4 .57E-02 | NA | NA | |
SF3A3 | 68 | 223 | 255 | 7 .86E-03 | 0 .64 | 7 .83E-02 | NA | NA | |
FBL | 81 | 49 | 63 | 1 .81E-02 | 0 .89 | 1 .14E-01 | NA | NA | |
RBP | 83 | 37 | 49 | 1 .92E-02 | 0 .68 | 1 .69E-02 | NA | NA |