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Table 4 The most significantly differentially expressed genes between high and low RFI Holstein-Friesian steers across three dietary phases

From: The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency

Diet and breed Gene LogFC P-value
HF.H1 SNRPD3 −0.37 0.0010
AK3 −0.35 0.0013
GSTM1 −0.87 0.0061
MOB3B 0.72 0.0061
LOC782233 −5.45 0.0061
HPRT1 −0.33 0.011
ENSBTAG00000032859 −0.66 0.016
ACMSD −1.04 0.024
PARM1 1.15 0.024
ANPEP 1.10 0.024
GUCY2D −0.89 0.024
GSTA4 −0.88 0.026
RAB4A −0.29 0.026
CYTH3 0.52 0.026
HSD17B6 −0.36 0.028
RAC1 0.35 0.038
HF.ZG INPP1 0.73 0.005
ALAS1 −0.94 0.074
HF.H2 UOX 0.85 0.028
C1R 7.45 0.055
LOC100295234 2.92 0.055
SNCA −3.61 0.055
FBP2 −3.06 0.055
  1. RFI residual feed intake, HF Holstein-Friesian, H1 high concentrate diet 1, H2 high concentrate diet 2, ZG zero-grazed grass diet, LogFC log2fold-change in low-RFI steers compared to high-RFI steers; P-value = Benjamini-Hochberg corrected P-value to account for multiple testing