Skip to main content

Table 3 Stress related genes within the ten investigated eukaryotes. Numbers reflect the number of putative genes retrieved within each gene category (See Additional file 1 for details)

From: Comparative transcriptomics suggest unique molecular adaptations within tardigrade lineages

Gene class/category

Tardigrada

Arthropoda

Nematoda

Chordata

Ascomycota

Es

Rc

Rv

He

Dm

Ce

Hs

Xt

Dr

Sc

Tardigrade unique proteinsa

0

23

32

25

0

0

0

0

0

0

Late Embryogenesis Abundant (LEA) b

5

6

9

7

0

2

0

0

0

0

Heat shock proteinsc

56

65

59

117

79

65

90

77

96

45

RNA/DNA Chaperones_Cold Shock Domain containingd

3

1

1

1

1

6

5

5

3

0

DNA repair

(58)

(91)

(74)

(80)

(61)

(57)

(77)

(73)

(74)

(57)

TP53 e

0

1

1

1

1

1

3

3

3

0

 Base excision repairf

18

31

24

27

15

13

22

21

19

14

 Mismatch repairg

15

20

13

16

10

12

14

14

14

14

 Nucleotide excision repairh

18

23

18

21

15

16

18

17

19

15

 Non-homologous end-joiningi

0

5

6

6

8

3

5

5

5

5

 Homologous recombinationj

7

11

12

9

12

12

15

13

14

9

Antioxidative stress

(70)

(79)

(79)

(89)

(82)

(89)

(66)

(53)

(68)

(29)

Superoxide dismutases (SOD_CuZn; SOD_Mn)

8

14

17

15

6

6

4

2

5

3

Catalase (CAT)

0

4

4

4

2

3

1

2

1

2

Peroxiredoxins (PRDX)

5

7

9

12

9

3

6

6

6

3

Thioredoxins (TXN; TXNRD; TXNL; TMX)

12

13

10

12

14

11

14

12

14

8

Glutaredoxin (GLRX)

5

4

3

3

4

6

4

4

4

5

Glutathione-disulfide reductase (GSR)

1

1

1

1

0

1

1

1

1

1

Glutathione peroxidase (GPX)

2

1

1

1

2

8

8

6

9

3

Glutathione synthetase (GSS)

1

2

2

3

2

1

1

1

1

1

Soluble glutathione S-transferases (GST soluble)

35

30

31

34

38

49

22

13

20

2

Microsomal glutathione S-transferases (microsomal GST)

0

2

0

2

3

0

4

5

6

0

Glucose-6-phosphate dehydrogenase (G6PD)

1

1

1

2

2

1

1

1

1

1

Peroxisomal biogenesis factorsk

4

3

5

2

17

13

21

21

23

12

Trehalose metabolism

(3)

(9)

(10)

(9)

(5)

(8)

(2)

(2)

(2)

(7)

Trehalose-phosphate synthase/phosphatase (TPS-TPP)

0

1

1

0

2

3

0

0

0

4

Trehalases (PGGHG/ATHL1, TREH)

3

8

9

9

3

5

2

2

2

3

  1. Es: Echiniscoides cf. sigismundi, Rc: Richtersius cf. coronifer, Rv: Ramazzottius cf. varieornatus, He: Hypsibius exemplaris, Dm: Drosophila melanogaster, Ce: Caenorhabditis elegans, Hs: Homo sapiens, Xt: Xenopus tropicalis, Dr: Danio rerio, Sc: Saccharomyces cerevisiae
  2. a= CAHS; SAHS; MAHS; RvLEAM; Dsup
  3. b= LEA; DUR-1
  4. c= HSP90; HSP70; HSP60; HSP40; HSP20; HSP10
  5. d= CSP; lin28; Y-box
  6. e= Tp53; p63/p73
  7. f= UNG; XRCC1; XRCC3; XRCC2; PNKP; Tdp1; APTX; POLB; POLD; POLE; FEN1; PCNA; PARP1–4
  8. g= MSH2; MSH6; MSH3; MSH4; MSH5; MLH1; PMS2; MLH3; Exo1; RFC
  9. h= XPC; CETN2; Rad23; DDB; GTF2H1/TFIIH1; GTF2H2/TFIIH2; GTF2H3/TFIIH3; GTF2H4/TFIIH4; CDK7; ERCC3; ERCC2; ERCC1; XPA; ERCC5
  10. i= XRCC6; XRCC5; CLP/XRCC4; LIG4; NHEJ1
  11. j= MRE11; Rad50; NBS1; Rad51; CtIP; BRCA1; BRCA2; Slx1; SLX4; Mus81; EME1
  12. k= PEX1; PEX2; PEX3; PEX5; PEX6; PEX7; PEX10; PEX11; PEX12; PEX13; PEX14; PEX16; PEX19; PEX26; PXMP2; PMP34; PXMP4; TYSND1