Fig. 4

Comparison of the predictions obtained by miRkwood and ShortStack. The Venn diagram of the predictions obtained by both tools with two different score thresholds for the miRkwood results (≥5 stars and equal to 6 stars). Within the rectangles, the bar plots describe the predictions: blue and red are for miRNA predictions associated with AGO1 and AGO4, respectively. Green is for predictions not-associated with AGO1 or AGO4 proteins. The dark and intermediate shades correspond to miRNA predictions which were annotated in miRBase or could be aligned with miRBase sequences, respectively. The light shade indicates predictions which were neither annotated nor aligned with miRBase