Label | Name - ARB primers | HVR | Location* | bp | Primer sequence | GC% | Reference | Original reference primer |
---|---|---|---|---|---|---|---|---|
8F_v1f | S-D-Bact-0008-d-S-20 | v1F | 8-27 | 20 | AGAGTTTGATCMTGGCTCAG | 50 | [67] | Â |
120R_v1r | S-D-Bact-0120-e-A-20 | v1R | 101-120 | 20 | TTACTCACCCGTNCGCCRCT | 55 | mod. rev-compl. after [68] | Â |
101F_v2f | S-D-Bact-0101-a-S-20 | v2F | 101-120 | 20 | AGYGGCGNACGGGTGAGTAA | 55 | mod. after [68] | Â |
355R_v2r | S-D-Bact-0355-a-A-18 | v2R | 338-355 | 18 | GCWGCCTCCCGTAGGAGT | 66 | mod. after [69] | Â |
338F_v3f | S-D-Bact-0338-a-S-20 | v3F | 337-354 | 20 | ACWCCTACGGGWGGCAGCAG | 65 | mod. after [70] | Â |
534R_v3r | S-D-Bact-0518-b-A-17 | v3R | 518-534 | 17 | ATTACCGCGGCTGCTGG | 65 | [71] | Â |
515F_v4f | S-*-Univ-0515-b-S-19 | v4F | 515-533 | 19 | GTGNCAGCMGCCGCGGTAA | 63 | mod. after [72] | Â |
806R_v4r | S-D-Bact-0756-a-A-20 | v4R | 787-806 | 20 | GGACTACHVGGGTWTCTAAT | 40 | mod. after [72] | Â |
784F_v5f | S-*-Univ-0779-a-S-15 | v5F | 784-798 | 15 | RGGATTAGATACCCY | 40 | mod. after [73] | Â |
926R_v5r | S-D-Bact-0907-b-A-20 | v5R | 907-926 | 20 | CCGTCAATTYYTTTRAGTTT | 25 | mod. after [74] | Â |
907F_v6f | S-D-Bact-0907-a-S-20 | v6F | 907-926 | 20 | AAACTYAAARRAATTGACGG | 25 | [75] | Â |
1114R_v6r | S-D-Bact-1114-b-A-16 | v6R | 1099-1114 | 16 | GGGTYKCGCTCGTTRY | 50 | mod. after [73] | S-D-Bact-1114-a-A-16 |
1099F_v7f | S-*-Univ-1099-a-S-16 | v7F | 1099-1114 | 16 | RYAACGAGCGMRACCC | 50 | new primer | S-*-Univ-1100-a-S-15 |
1200R_v7r | S-D-Bact-1200-a-A-16 | v7R | 1185-1200 | 16 | GAYTTGACRTCVTCCM | 38 | new primer | Â |
1185F_v8f | S-D-Bact-1185-a-S-16 | v8F | 1185-1200 | 16 | KGGABCACCGCYCGYC | 63 | new primer | Â |
1407R_v8r | S-D-Bact-1407-a-A-16 | v8R | 1391-1407 | 16 | GRCGRGCGGTGWGTRC | 63 | mod. after [76] | S-D-Bact-1391-a-A-17 |
1391F_v9f | S-D-Bact-1391-a-S-16 | v9F | 1391-1407 | 16 | GYACWCACCGCYCGYC | 63 | new primer | Â |
1510R_v9r | S-*-Univ-1510-b-A-19 | v9R | 1492-1510 | 19 | GGNTACCTTGTTACGACTT | 42 | mod. after [77] | S-*-Univ-1492-a-A-21 |